Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS23410

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS23405 and BPHYT_RS23410 are separated by 964 nucleotides BPHYT_RS23405: BPHYT_RS23405 - glucosamine--fructose-6-phosphate aminotransferase, at 812,932 to 814,749 _RS23405 BPHYT_RS23410: BPHYT_RS23410 - hypothetical protein, at 815,714 to 816,442 _RS23410 Position (kb) 815 816 817Strain fitness (log2 ratio) -1 0 1at 814.910 kb on + strandat 814.911 kb on - strandat 815.222 kb on + strandat 815.409 kb on - strandat 815.919 kb on - strand, within BPHYT_RS23410at 816.270 kb on - strand, within BPHYT_RS23410at 816.821 kb on + strandat 817.186 kb on - strandat 817.396 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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814,910 + -0.1
814,911 - +0.4
815,222 + -0.2
815,409 - -0.6
815,919 - BPHYT_RS23410 0.28 +0.7
816,270 - BPHYT_RS23410 0.76 +0.3
816,821 + +0.4
817,186 - +0.2
817,396 - +0.4

Or see this region's nucleotide sequence