Experiment: Trisodium citrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22090 and BPHYT_RS22095 are separated by 224 nucleotides BPHYT_RS22095 and BPHYT_RS22100 are separated by 418 nucleotides
BPHYT_RS22090: BPHYT_RS22090 - hypothetical protein, at 513,266 to 514,138
_RS22090
BPHYT_RS22095: BPHYT_RS22095 - porin, at 514,363 to 515,544
_RS22095
BPHYT_RS22100: BPHYT_RS22100 - ribonuclease BN, at 515,963 to 517,294
_RS22100
Position (kb) 514
515
516 Strain fitness (log2 ratio) -2
-1
0
1 at 513.394 kb on + strand, within BPHYT_RS22090 at 513.395 kb on - strand, within BPHYT_RS22090 at 513.609 kb on + strand, within BPHYT_RS22090 at 513.654 kb on - strand, within BPHYT_RS22090 at 513.696 kb on - strand, within BPHYT_RS22090 at 513.855 kb on - strand, within BPHYT_RS22090 at 513.855 kb on - strand, within BPHYT_RS22090 at 513.878 kb on - strand, within BPHYT_RS22090 at 513.911 kb on + strand, within BPHYT_RS22090 at 513.911 kb on + strand, within BPHYT_RS22090 at 514.136 kb on + strand at 514.422 kb on - strand at 514.428 kb on - strand at 514.474 kb on - strand at 514.474 kb on - strand at 514.515 kb on - strand, within BPHYT_RS22095 at 514.541 kb on + strand, within BPHYT_RS22095 at 514.568 kb on + strand, within BPHYT_RS22095 at 514.602 kb on - strand, within BPHYT_RS22095 at 514.602 kb on - strand, within BPHYT_RS22095 at 514.607 kb on + strand, within BPHYT_RS22095 at 514.607 kb on + strand, within BPHYT_RS22095 at 514.607 kb on + strand, within BPHYT_RS22095 at 514.608 kb on - strand, within BPHYT_RS22095 at 514.608 kb on - strand, within BPHYT_RS22095 at 514.652 kb on + strand, within BPHYT_RS22095 at 514.670 kb on + strand, within BPHYT_RS22095 at 514.671 kb on - strand, within BPHYT_RS22095 at 514.713 kb on - strand, within BPHYT_RS22095 at 514.760 kb on + strand, within BPHYT_RS22095 at 514.806 kb on - strand, within BPHYT_RS22095 at 514.917 kb on - strand, within BPHYT_RS22095 at 514.949 kb on + strand, within BPHYT_RS22095 at 514.950 kb on - strand, within BPHYT_RS22095 at 515.012 kb on + strand, within BPHYT_RS22095 at 515.012 kb on + strand at 515.013 kb on - strand, within BPHYT_RS22095 at 515.013 kb on - strand, within BPHYT_RS22095 at 515.013 kb on - strand, within BPHYT_RS22095 at 515.054 kb on + strand, within BPHYT_RS22095 at 515.055 kb on - strand, within BPHYT_RS22095 at 515.200 kb on - strand, within BPHYT_RS22095 at 515.432 kb on + strand at 515.433 kb on - strand at 515.459 kb on + strand at 515.523 kb on + strand at 515.567 kb on - strand at 515.592 kb on + strand at 515.592 kb on + strand at 515.760 kb on + strand at 515.760 kb on + strand at 515.760 kb on + strand at 515.761 kb on - strand at 515.796 kb on + strand at 515.797 kb on - strand at 515.805 kb on + strand at 515.805 kb on + strand at 515.805 kb on + strand at 516.064 kb on - strand at 516.489 kb on + strand, within BPHYT_RS22100 at 516.489 kb on + strand, within BPHYT_RS22100
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate (C) remove 513,394 + BPHYT_RS22090 0.15 -0.3 513,395 - BPHYT_RS22090 0.15 +0.2 513,609 + BPHYT_RS22090 0.39 +0.7 513,654 - BPHYT_RS22090 0.44 -0.2 513,696 - BPHYT_RS22090 0.49 +0.1 513,855 - BPHYT_RS22090 0.67 -0.0 513,855 - BPHYT_RS22090 0.67 +0.0 513,878 - BPHYT_RS22090 0.70 -0.5 513,911 + BPHYT_RS22090 0.74 -0.2 513,911 + BPHYT_RS22090 0.74 +0.1 514,136 + -0.4 514,422 - -0.7 514,428 - -0.9 514,474 - -0.9 514,474 - -0.5 514,515 - BPHYT_RS22095 0.13 -0.5 514,541 + BPHYT_RS22095 0.15 -2.0 514,568 + BPHYT_RS22095 0.17 -0.7 514,602 - BPHYT_RS22095 0.20 -1.1 514,602 - BPHYT_RS22095 0.20 -1.4 514,607 + BPHYT_RS22095 0.21 +1.6 514,607 + BPHYT_RS22095 0.21 -0.3 514,607 + BPHYT_RS22095 0.21 +0.6 514,608 - BPHYT_RS22095 0.21 -1.2 514,608 - BPHYT_RS22095 0.21 -0.5 514,652 + BPHYT_RS22095 0.24 +0.4 514,670 + BPHYT_RS22095 0.26 +0.0 514,671 - BPHYT_RS22095 0.26 -1.6 514,713 - BPHYT_RS22095 0.30 -1.2 514,760 + BPHYT_RS22095 0.34 -0.2 514,806 - BPHYT_RS22095 0.37 +0.4 514,917 - BPHYT_RS22095 0.47 +0.6 514,949 + BPHYT_RS22095 0.50 -1.4 514,950 - BPHYT_RS22095 0.50 -0.3 515,012 + BPHYT_RS22095 0.55 -1.0 515,012 + -1.6 515,013 - BPHYT_RS22095 0.55 -1.3 515,013 - BPHYT_RS22095 0.55 +0.0 515,013 - BPHYT_RS22095 0.55 -0.6 515,054 + BPHYT_RS22095 0.58 -1.6 515,055 - BPHYT_RS22095 0.59 -1.7 515,200 - BPHYT_RS22095 0.71 -0.8 515,432 + -0.8 515,433 - -1.6 515,459 + +0.8 515,523 + -0.7 515,567 - -0.2 515,592 + -0.6 515,592 + -0.9 515,760 + +0.0 515,760 + -1.5 515,760 + +0.3 515,761 - +0.6 515,796 + -0.0 515,797 - -0.3 515,805 + -1.5 515,805 + -0.8 515,805 + -0.8 516,064 - +0.9 516,489 + BPHYT_RS22100 0.39 -0.4 516,489 + BPHYT_RS22100 0.39 +0.1
Or see this region's nucleotide sequence