Experiment: Trisodium citrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS07180 and BPHYT_RS07185 are separated by 43 nucleotides BPHYT_RS07185 and BPHYT_RS07190 are separated by 19 nucleotides BPHYT_RS07190 and BPHYT_RS07195 are separated by 13 nucleotides
BPHYT_RS07180: BPHYT_RS07180 - Zn-dependent protease, at 1,630,727 to 1,632,088
_RS07180
BPHYT_RS07185: BPHYT_RS07185 - alanine acetyltransferase, at 1,632,132 to 1,632,674
_RS07185
BPHYT_RS07190: BPHYT_RS07190 - acetyltransferase, at 1,632,694 to 1,633,227
_RS07190
BPHYT_RS07195: BPHYT_RS07195 - multidrug efflux RND transporter permease subunit, at 1,633,241 to 1,636,453
_RS07195
Position (kb) 1632
1633
1634 Strain fitness (log2 ratio) -1
0
1 at 1631.826 kb on - strand, within BPHYT_RS07180 at 1632.085 kb on - strand at 1632.959 kb on + strand, within BPHYT_RS07190 at 1632.960 kb on - strand, within BPHYT_RS07190 at 1632.983 kb on - strand, within BPHYT_RS07190 at 1633.344 kb on - strand at 1633.386 kb on - strand at 1633.463 kb on - strand at 1633.626 kb on + strand, within BPHYT_RS07195 at 1634.069 kb on + strand, within BPHYT_RS07195
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate (C) remove 1,631,826 - BPHYT_RS07180 0.81 +0.1 1,632,085 - +0.4 1,632,959 + BPHYT_RS07190 0.50 +0.3 1,632,960 - BPHYT_RS07190 0.50 +0.7 1,632,983 - BPHYT_RS07190 0.54 +0.6 1,633,344 - +0.2 1,633,386 - -0.2 1,633,463 - +0.8 1,633,626 + BPHYT_RS07195 0.12 +0.4 1,634,069 + BPHYT_RS07195 0.26 +0.3
Or see this region's nucleotide sequence