Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_29045

Experiment: L-Lysine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_29040 and AO356_29045 are separated by 342 nucleotidesAO356_29045 and AO356_29050 are separated by 581 nucleotides AO356_29040: AO356_29040 - alanine racemase, at 6,749,915 to 6,751,189 _29040 AO356_29045: AO356_29045 - hypothetical protein, at 6,751,532 to 6,752,020 _29045 AO356_29050: AO356_29050 - hypothetical protein, at 6,752,602 to 6,755,649 _29050 Position (kb) 6751 6752 6753Strain fitness (log2 ratio) -1 0 1at 6750.535 kb on - strand, within AO356_29040at 6750.774 kb on + strand, within AO356_29040at 6750.774 kb on + strand, within AO356_29040at 6750.909 kb on + strand, within AO356_29040at 6750.909 kb on + strand, within AO356_29040at 6750.909 kb on + strand, within AO356_29040at 6750.910 kb on - strand, within AO356_29040at 6751.092 kb on + strandat 6751.092 kb on + strandat 6751.171 kb on + strandat 6751.171 kb on + strandat 6751.172 kb on - strandat 6751.172 kb on - strandat 6751.180 kb on + strandat 6751.181 kb on - strandat 6751.395 kb on + strandat 6751.395 kb on + strandat 6751.396 kb on - strandat 6751.396 kb on - strandat 6751.508 kb on - strandat 6751.985 kb on + strandat 6751.985 kb on + strandat 6752.001 kb on - strandat 6752.691 kb on - strandat 6752.798 kb on + strandat 6752.930 kb on + strand, within AO356_29050

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine (C)
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6,750,535 - AO356_29040 0.49 -0.5
6,750,774 + AO356_29040 0.67 -0.8
6,750,774 + AO356_29040 0.67 +1.0
6,750,909 + AO356_29040 0.78 +0.6
6,750,909 + AO356_29040 0.78 +0.7
6,750,909 + AO356_29040 0.78 +0.8
6,750,910 - AO356_29040 0.78 +0.2
6,751,092 + +0.3
6,751,092 + +1.0
6,751,171 + +0.1
6,751,171 + -1.2
6,751,172 - +0.2
6,751,172 - -0.3
6,751,180 + +1.0
6,751,181 - -0.1
6,751,395 + +0.4
6,751,395 + +0.2
6,751,396 - +1.3
6,751,396 - +1.5
6,751,508 - -0.9
6,751,985 + +0.6
6,751,985 + -0.4
6,752,001 - +0.6
6,752,691 - +1.1
6,752,798 + +0.5
6,752,930 + AO356_29050 0.11 +0.2

Or see this region's nucleotide sequence