Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_04415

Experiment: L-Lysine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_04410 and AO356_04415 are separated by 124 nucleotidesAO356_04415 and AO356_04420 overlap by 4 nucleotides AO356_04410: AO356_04410 - hydroxyacid dehydrogenase, at 999,417 to 1,000,349 _04410 AO356_04415: AO356_04415 - hypothetical protein, at 1,000,474 to 1,000,767 _04415 AO356_04420: AO356_04420 - ribonuclease D, at 1,000,764 to 1,001,897 _04420 Position (kb) 1000 1001Strain fitness (log2 ratio) -2 -1 0 1at 999.733 kb on + strand, within AO356_04410at 999.733 kb on + strand, within AO356_04410at 999.733 kb on + strand, within AO356_04410at 999.733 kb on + strand, within AO356_04410at 999.733 kb on + strand, within AO356_04410at 999.733 kb on + strand, within AO356_04410at 999.756 kb on - strand, within AO356_04410at 999.778 kb on + strand, within AO356_04410at 999.778 kb on + strand, within AO356_04410at 999.778 kb on + strand, within AO356_04410at 999.778 kb on + strand, within AO356_04410at 999.779 kb on - strand, within AO356_04410at 999.779 kb on - strand, within AO356_04410at 999.779 kb on - strand, within AO356_04410at 999.779 kb on - strand, within AO356_04410at 999.779 kb on - strand, within AO356_04410at 999.779 kb on - strand, within AO356_04410at 999.868 kb on + strand, within AO356_04410at 999.868 kb on + strand, within AO356_04410at 999.868 kb on + strand, within AO356_04410at 999.868 kb on + strand, within AO356_04410at 999.868 kb on + strand, within AO356_04410at 999.869 kb on - strand, within AO356_04410at 999.869 kb on - strand, within AO356_04410at 999.869 kb on - strand, within AO356_04410at 1000.039 kb on + strand, within AO356_04410at 1000.039 kb on + strand, within AO356_04410at 1000.039 kb on + strand, within AO356_04410at 1000.039 kb on + strand, within AO356_04410at 1000.039 kb on + strand, within AO356_04410at 1000.040 kb on - strand, within AO356_04410at 1000.040 kb on - strand, within AO356_04410at 1000.040 kb on - strand, within AO356_04410at 1000.040 kb on - strand, within AO356_04410at 1000.040 kb on - strand, within AO356_04410at 1000.040 kb on - strand, within AO356_04410at 1000.040 kb on - strand, within AO356_04410at 1000.040 kb on - strand, within AO356_04410at 1000.052 kb on - strand, within AO356_04410at 1000.281 kb on - strandat 1000.312 kb on + strandat 1000.313 kb on - strandat 1000.313 kb on - strandat 1000.313 kb on - strandat 1000.313 kb on - strandat 1000.423 kb on - strandat 1000.423 kb on - strandat 1000.524 kb on - strand, within AO356_04415at 1000.556 kb on + strand, within AO356_04415at 1000.557 kb on - strand, within AO356_04415at 1000.557 kb on - strand, within AO356_04415at 1000.712 kb on + strand, within AO356_04415at 1000.712 kb on + strand, within AO356_04415at 1000.712 kb on + strand, within AO356_04415at 1000.712 kb on + strand, within AO356_04415at 1000.712 kb on + strand, within AO356_04415at 1000.712 kb on + strand, within AO356_04415at 1000.712 kb on + strand, within AO356_04415at 1000.712 kb on + strand, within AO356_04415at 1000.712 kb on + strand, within AO356_04415at 1000.712 kb on + strand, within AO356_04415at 1000.712 kb on + strand, within AO356_04415at 1000.712 kb on + strand, within AO356_04415at 1000.713 kb on - strand, within AO356_04415at 1000.713 kb on - strand, within AO356_04415at 1000.713 kb on - strand, within AO356_04415at 1000.713 kb on - strand, within AO356_04415at 1000.713 kb on - strand, within AO356_04415at 1000.718 kb on + strand, within AO356_04415at 1000.718 kb on + strand, within AO356_04415at 1000.718 kb on + strand, within AO356_04415at 1000.718 kb on + strand, within AO356_04415at 1000.718 kb on + strand, within AO356_04415at 1000.718 kb on + strand, within AO356_04415at 1000.718 kb on + strand, within AO356_04415at 1000.718 kb on + strand, within AO356_04415at 1000.719 kb on - strand, within AO356_04415at 1000.719 kb on - strand, within AO356_04415at 1000.719 kb on - strand, within AO356_04415at 1000.719 kb on - strand, within AO356_04415at 1000.719 kb on - strand, within AO356_04415at 1000.719 kb on - strand, within AO356_04415at 1000.719 kb on - strand, within AO356_04415at 1000.719 kb on - strand, within AO356_04415at 1000.745 kb on + strandat 1000.746 kb on - strandat 1000.759 kb on - strandat 1001.254 kb on - strand, within AO356_04420at 1001.254 kb on - strand, within AO356_04420at 1001.400 kb on + strand, within AO356_04420at 1001.401 kb on - strand, within AO356_04420at 1001.441 kb on - strand, within AO356_04420at 1001.539 kb on + strand, within AO356_04420

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine (C)
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999,733 + AO356_04410 0.34 -0.8
999,733 + AO356_04410 0.34 +0.5
999,733 + AO356_04410 0.34 +0.8
999,733 + AO356_04410 0.34 +1.1
999,733 + AO356_04410 0.34 -0.3
999,733 + AO356_04410 0.34 -0.2
999,756 - AO356_04410 0.36 +0.0
999,778 + AO356_04410 0.39 +0.2
999,778 + AO356_04410 0.39 -0.1
999,778 + AO356_04410 0.39 -0.1
999,778 + AO356_04410 0.39 +1.4
999,779 - AO356_04410 0.39 -0.0
999,779 - AO356_04410 0.39 +0.5
999,779 - AO356_04410 0.39 +0.3
999,779 - AO356_04410 0.39 -1.3
999,779 - AO356_04410 0.39 +0.0
999,779 - AO356_04410 0.39 -0.0
999,868 + AO356_04410 0.48 +0.9
999,868 + AO356_04410 0.48 +0.5
999,868 + AO356_04410 0.48 -0.8
999,868 + AO356_04410 0.48 -2.5
999,868 + AO356_04410 0.48 -0.5
999,869 - AO356_04410 0.48 +0.2
999,869 - AO356_04410 0.48 -0.3
999,869 - AO356_04410 0.48 +1.3
1,000,039 + AO356_04410 0.67 +0.6
1,000,039 + AO356_04410 0.67 -1.5
1,000,039 + AO356_04410 0.67 +1.0
1,000,039 + AO356_04410 0.67 +0.1
1,000,039 + AO356_04410 0.67 +0.6
1,000,040 - AO356_04410 0.67 +0.3
1,000,040 - AO356_04410 0.67 +0.4
1,000,040 - AO356_04410 0.67 -0.0
1,000,040 - AO356_04410 0.67 +0.8
1,000,040 - AO356_04410 0.67 -0.4
1,000,040 - AO356_04410 0.67 +0.6
1,000,040 - AO356_04410 0.67 +0.1
1,000,040 - AO356_04410 0.67 +0.7
1,000,052 - AO356_04410 0.68 +0.1
1,000,281 - -0.0
1,000,312 + +0.0
1,000,313 - +0.4
1,000,313 - +0.7
1,000,313 - -0.2
1,000,313 - +0.9
1,000,423 - +1.6
1,000,423 - -0.1
1,000,524 - AO356_04415 0.17 -0.9
1,000,556 + AO356_04415 0.28 +0.0
1,000,557 - AO356_04415 0.28 -1.0
1,000,557 - AO356_04415 0.28 +0.4
1,000,712 + AO356_04415 0.81 +0.3
1,000,712 + AO356_04415 0.81 +0.2
1,000,712 + AO356_04415 0.81 +0.1
1,000,712 + AO356_04415 0.81 +1.3
1,000,712 + AO356_04415 0.81 +0.1
1,000,712 + AO356_04415 0.81 -1.4
1,000,712 + AO356_04415 0.81 -0.6
1,000,712 + AO356_04415 0.81 +0.8
1,000,712 + AO356_04415 0.81 -1.0
1,000,712 + AO356_04415 0.81 -0.5
1,000,712 + AO356_04415 0.81 -0.5
1,000,712 + AO356_04415 0.81 -0.4
1,000,713 - AO356_04415 0.81 +0.5
1,000,713 - AO356_04415 0.81 -0.8
1,000,713 - AO356_04415 0.81 +0.9
1,000,713 - AO356_04415 0.81 +0.1
1,000,713 - AO356_04415 0.81 -0.5
1,000,718 + AO356_04415 0.83 -0.5
1,000,718 + AO356_04415 0.83 +0.2
1,000,718 + AO356_04415 0.83 -0.8
1,000,718 + AO356_04415 0.83 -1.0
1,000,718 + AO356_04415 0.83 -0.1
1,000,718 + AO356_04415 0.83 -0.3
1,000,718 + AO356_04415 0.83 +0.0
1,000,718 + AO356_04415 0.83 -1.6
1,000,719 - AO356_04415 0.83 -1.5
1,000,719 - AO356_04415 0.83 +0.7
1,000,719 - AO356_04415 0.83 +0.0
1,000,719 - AO356_04415 0.83 -0.1
1,000,719 - AO356_04415 0.83 +0.9
1,000,719 - AO356_04415 0.83 +0.7
1,000,719 - AO356_04415 0.83 -0.3
1,000,719 - AO356_04415 0.83 -0.1
1,000,745 + -0.4
1,000,746 - -1.2
1,000,759 - +0.8
1,001,254 - AO356_04420 0.43 +0.4
1,001,254 - AO356_04420 0.43 +0.3
1,001,400 + AO356_04420 0.56 +0.5
1,001,401 - AO356_04420 0.56 +0.4
1,001,441 - AO356_04420 0.60 -0.0
1,001,539 + AO356_04420 0.68 -0.3

Or see this region's nucleotide sequence