Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_03125

Experiment: L-Lysine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_03120 and AO356_03125 are separated by 127 nucleotidesAO356_03125 and AO356_03130 are separated by 64 nucleotidesAO356_03130 and AO356_03135 are separated by 61 nucleotides AO356_03120: AO356_03120 - phospho-2-dehydro-3-deoxyheptonate aldolase, at 697,968 to 699,314 _03120 AO356_03125: AO356_03125 - cytoplasmic protein, at 699,442 to 700,671 _03125 AO356_03130: AO356_03130 - hypothetical protein, at 700,736 to 700,954 _03130 AO356_03135: AO356_03135 - LysR family transcriptional regulator, at 701,016 to 701,906 _03135 Position (kb) 699 700 701Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 698.562 kb on + strand, within AO356_03120at 698.563 kb on - strand, within AO356_03120at 698.563 kb on - strand, within AO356_03120at 698.685 kb on + strand, within AO356_03120at 698.685 kb on + strand, within AO356_03120at 698.685 kb on + strand, within AO356_03120at 698.686 kb on - strand, within AO356_03120at 698.727 kb on + strand, within AO356_03120at 698.728 kb on - strand, within AO356_03120at 698.728 kb on - strand, within AO356_03120at 698.728 kb on - strand, within AO356_03120at 698.730 kb on + strand, within AO356_03120at 698.730 kb on + strand, within AO356_03120at 698.730 kb on + strand, within AO356_03120at 698.730 kb on + strand, within AO356_03120at 698.731 kb on - strand, within AO356_03120at 698.731 kb on - strand, within AO356_03120at 699.052 kb on - strand, within AO356_03120at 699.126 kb on + strand, within AO356_03120at 699.127 kb on - strand, within AO356_03120at 699.127 kb on - strand, within AO356_03120at 699.127 kb on - strand, within AO356_03120at 699.312 kb on + strandat 699.331 kb on + strandat 699.432 kb on + strandat 699.691 kb on + strand, within AO356_03125at 699.691 kb on + strand, within AO356_03125at 699.691 kb on + strand, within AO356_03125at 699.691 kb on + strand, within AO356_03125at 699.692 kb on - strand, within AO356_03125at 699.695 kb on + strand, within AO356_03125at 699.695 kb on + strand, within AO356_03125at 699.695 kb on + strand, within AO356_03125at 699.695 kb on + strand, within AO356_03125at 699.695 kb on + strand, within AO356_03125at 699.695 kb on + strand, within AO356_03125at 699.695 kb on + strand, within AO356_03125at 699.695 kb on + strand, within AO356_03125at 699.696 kb on - strand, within AO356_03125at 699.696 kb on - strand, within AO356_03125at 699.696 kb on - strand, within AO356_03125at 699.696 kb on - strand, within AO356_03125at 699.696 kb on - strand, within AO356_03125at 699.696 kb on - strand, within AO356_03125at 699.696 kb on - strand, within AO356_03125at 699.696 kb on - strand, within AO356_03125at 699.696 kb on - strand, within AO356_03125at 699.696 kb on - strand, within AO356_03125at 699.696 kb on - strand, within AO356_03125at 699.698 kb on + strand, within AO356_03125at 699.698 kb on + strand, within AO356_03125at 699.704 kb on + strand, within AO356_03125at 699.704 kb on + strand, within AO356_03125at 699.704 kb on + strand, within AO356_03125at 699.704 kb on + strand, within AO356_03125at 699.704 kb on + strand, within AO356_03125at 699.704 kb on + strand, within AO356_03125at 699.704 kb on + strand, within AO356_03125at 699.704 kb on + strand, within AO356_03125at 699.704 kb on + strand, within AO356_03125at 699.705 kb on - strand, within AO356_03125at 699.705 kb on - strand, within AO356_03125at 699.705 kb on - strand, within AO356_03125at 699.705 kb on - strand, within AO356_03125at 699.705 kb on - strand, within AO356_03125at 699.705 kb on - strand, within AO356_03125at 699.705 kb on - strand, within AO356_03125at 699.705 kb on - strand, within AO356_03125at 699.728 kb on + strand, within AO356_03125at 699.728 kb on + strand, within AO356_03125at 699.728 kb on + strand, within AO356_03125at 699.728 kb on + strand, within AO356_03125at 699.728 kb on + strand, within AO356_03125at 699.728 kb on + strand, within AO356_03125at 699.728 kb on + strand, within AO356_03125at 699.729 kb on - strand, within AO356_03125at 699.729 kb on - strand, within AO356_03125at 699.729 kb on - strand, within AO356_03125at 699.729 kb on - strand, within AO356_03125at 699.729 kb on - strand, within AO356_03125at 699.959 kb on + strand, within AO356_03125at 699.959 kb on + strand, within AO356_03125at 699.960 kb on - strand, within AO356_03125at 699.960 kb on - strand, within AO356_03125at 700.147 kb on + strand, within AO356_03125at 700.313 kb on + strand, within AO356_03125at 700.313 kb on + strand, within AO356_03125at 700.314 kb on - strand, within AO356_03125at 700.314 kb on - strand, within AO356_03125at 700.314 kb on - strand, within AO356_03125at 700.365 kb on - strand, within AO356_03125at 700.365 kb on - strand, within AO356_03125at 700.365 kb on - strand, within AO356_03125at 700.365 kb on - strand, within AO356_03125at 700.365 kb on - strand, within AO356_03125at 700.496 kb on + strand, within AO356_03125at 700.496 kb on + strand, within AO356_03125at 700.496 kb on + strand, within AO356_03125at 700.496 kb on + strand, within AO356_03125at 700.698 kb on + strandat 700.698 kb on + strandat 700.698 kb on + strandat 700.698 kb on + strandat 700.698 kb on + strandat 700.698 kb on + strandat 700.698 kb on + strandat 700.698 kb on + strandat 700.698 kb on + strandat 700.698 kb on + strandat 700.699 kb on - strandat 700.723 kb on - strandat 700.925 kb on + strand, within AO356_03130at 700.926 kb on - strand, within AO356_03130at 700.926 kb on - strand, within AO356_03130at 700.931 kb on + strand, within AO356_03130at 700.931 kb on + strand, within AO356_03130at 700.931 kb on + strand, within AO356_03130at 700.931 kb on + strand, within AO356_03130at 700.931 kb on + strand, within AO356_03130at 700.932 kb on - strand, within AO356_03130at 700.932 kb on - strand, within AO356_03130at 700.932 kb on - strand, within AO356_03130at 700.932 kb on - strand, within AO356_03130at 700.932 kb on - strand, within AO356_03130at 700.932 kb on - strand, within AO356_03130at 700.935 kb on + strandat 700.936 kb on - strandat 700.936 kb on - strandat 701.000 kb on - strandat 701.031 kb on + strandat 701.031 kb on + strandat 701.031 kb on + strandat 701.032 kb on - strandat 701.032 kb on - strandat 701.032 kb on - strandat 701.032 kb on - strandat 701.032 kb on - strandat 701.061 kb on + strandat 701.062 kb on - strandat 701.090 kb on + strandat 701.090 kb on + strandat 701.091 kb on - strandat 701.271 kb on + strand, within AO356_03135at 701.330 kb on + strand, within AO356_03135at 701.330 kb on + strand, within AO356_03135at 701.331 kb on - strand, within AO356_03135at 701.331 kb on - strand, within AO356_03135at 701.331 kb on - strand, within AO356_03135at 701.367 kb on + strand, within AO356_03135at 701.368 kb on - strand, within AO356_03135at 701.368 kb on - strand, within AO356_03135at 701.368 kb on - strand, within AO356_03135at 701.368 kb on - strand, within AO356_03135at 701.368 kb on - strand, within AO356_03135at 701.415 kb on + strand, within AO356_03135

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine (C)
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698,562 + AO356_03120 0.44 -1.3
698,563 - AO356_03120 0.44 +0.5
698,563 - AO356_03120 0.44 +0.5
698,685 + AO356_03120 0.53 +0.9
698,685 + AO356_03120 0.53 +0.9
698,685 + AO356_03120 0.53 +0.8
698,686 - AO356_03120 0.53 +0.3
698,727 + AO356_03120 0.56 -0.1
698,728 - AO356_03120 0.56 +0.0
698,728 - AO356_03120 0.56 -0.5
698,728 - AO356_03120 0.56 +1.0
698,730 + AO356_03120 0.57 +1.0
698,730 + AO356_03120 0.57 +1.0
698,730 + AO356_03120 0.57 -1.3
698,730 + AO356_03120 0.57 -0.6
698,731 - AO356_03120 0.57 -0.9
698,731 - AO356_03120 0.57 -0.3
699,052 - AO356_03120 0.80 +0.1
699,126 + AO356_03120 0.86 -1.3
699,127 - AO356_03120 0.86 +0.1
699,127 - AO356_03120 0.86 +0.9
699,127 - AO356_03120 0.86 +0.4
699,312 + +1.4
699,331 + +0.3
699,432 + +0.6
699,691 + AO356_03125 0.20 +0.2
699,691 + AO356_03125 0.20 +0.1
699,691 + AO356_03125 0.20 -0.5
699,691 + AO356_03125 0.20 -0.9
699,692 - AO356_03125 0.20 +0.4
699,695 + AO356_03125 0.21 +0.5
699,695 + AO356_03125 0.21 +0.3
699,695 + AO356_03125 0.21 +1.2
699,695 + AO356_03125 0.21 +1.4
699,695 + AO356_03125 0.21 +0.4
699,695 + AO356_03125 0.21 -1.4
699,695 + AO356_03125 0.21 -0.2
699,695 + AO356_03125 0.21 -0.9
699,696 - AO356_03125 0.21 -0.1
699,696 - AO356_03125 0.21 -1.0
699,696 - AO356_03125 0.21 -0.7
699,696 - AO356_03125 0.21 -0.8
699,696 - AO356_03125 0.21 -0.1
699,696 - AO356_03125 0.21 +0.9
699,696 - AO356_03125 0.21 +1.2
699,696 - AO356_03125 0.21 +0.8
699,696 - AO356_03125 0.21 +0.3
699,696 - AO356_03125 0.21 -0.3
699,696 - AO356_03125 0.21 +0.3
699,698 + AO356_03125 0.21 +0.4
699,698 + AO356_03125 0.21 -0.7
699,704 + AO356_03125 0.21 +0.4
699,704 + AO356_03125 0.21 -0.5
699,704 + AO356_03125 0.21 -0.1
699,704 + AO356_03125 0.21 +0.0
699,704 + AO356_03125 0.21 +0.2
699,704 + AO356_03125 0.21 +0.1
699,704 + AO356_03125 0.21 -0.6
699,704 + AO356_03125 0.21 +0.6
699,704 + AO356_03125 0.21 -1.0
699,705 - AO356_03125 0.21 +1.0
699,705 - AO356_03125 0.21 -0.5
699,705 - AO356_03125 0.21 +0.3
699,705 - AO356_03125 0.21 +0.5
699,705 - AO356_03125 0.21 -0.8
699,705 - AO356_03125 0.21 +0.8
699,705 - AO356_03125 0.21 -0.7
699,705 - AO356_03125 0.21 -0.1
699,728 + AO356_03125 0.23 +0.9
699,728 + AO356_03125 0.23 +1.0
699,728 + AO356_03125 0.23 -1.2
699,728 + AO356_03125 0.23 +0.3
699,728 + AO356_03125 0.23 +0.0
699,728 + AO356_03125 0.23 -0.9
699,728 + AO356_03125 0.23 +0.5
699,729 - AO356_03125 0.23 +2.6
699,729 - AO356_03125 0.23 +0.9
699,729 - AO356_03125 0.23 +0.7
699,729 - AO356_03125 0.23 -0.6
699,729 - AO356_03125 0.23 +0.7
699,959 + AO356_03125 0.42 +0.5
699,959 + AO356_03125 0.42 +0.7
699,960 - AO356_03125 0.42 +0.1
699,960 - AO356_03125 0.42 +0.1
700,147 + AO356_03125 0.57 +0.4
700,313 + AO356_03125 0.71 +0.0
700,313 + AO356_03125 0.71 +0.0
700,314 - AO356_03125 0.71 +0.2
700,314 - AO356_03125 0.71 +0.5
700,314 - AO356_03125 0.71 -1.1
700,365 - AO356_03125 0.75 -0.3
700,365 - AO356_03125 0.75 +0.4
700,365 - AO356_03125 0.75 -0.1
700,365 - AO356_03125 0.75 -0.6
700,365 - AO356_03125 0.75 +0.9
700,496 + AO356_03125 0.86 -1.5
700,496 + AO356_03125 0.86 +1.4
700,496 + AO356_03125 0.86 +0.6
700,496 + AO356_03125 0.86 -0.2
700,698 + +1.1
700,698 + -2.7
700,698 + +0.8
700,698 + +0.0
700,698 + +0.9
700,698 + -2.2
700,698 + +0.1
700,698 + +1.1
700,698 + +0.7
700,698 + +1.6
700,699 - +1.6
700,723 - +0.1
700,925 + AO356_03130 0.86 -0.2
700,926 - AO356_03130 0.87 +0.2
700,926 - AO356_03130 0.87 +1.0
700,931 + AO356_03130 0.89 +2.8
700,931 + AO356_03130 0.89 +1.3
700,931 + AO356_03130 0.89 +1.2
700,931 + AO356_03130 0.89 +0.7
700,931 + AO356_03130 0.89 +0.8
700,932 - AO356_03130 0.89 -2.2
700,932 - AO356_03130 0.89 +1.1
700,932 - AO356_03130 0.89 +2.3
700,932 - AO356_03130 0.89 +1.0
700,932 - AO356_03130 0.89 +0.7
700,932 - AO356_03130 0.89 +1.0
700,935 + -1.6
700,936 - +0.5
700,936 - +1.6
701,000 - +0.5
701,031 + +1.3
701,031 + +0.9
701,031 + -2.1
701,032 - +0.3
701,032 - +0.5
701,032 - +0.6
701,032 - +0.9
701,032 - +0.4
701,061 + +2.0
701,062 - +1.7
701,090 + +1.6
701,090 + +2.0
701,091 - +0.4
701,271 + AO356_03135 0.29 +0.9
701,330 + AO356_03135 0.35 +0.3
701,330 + AO356_03135 0.35 +2.2
701,331 - AO356_03135 0.35 +0.4
701,331 - AO356_03135 0.35 -2.8
701,331 - AO356_03135 0.35 +0.9
701,367 + AO356_03135 0.39 -1.1
701,368 - AO356_03135 0.40 -0.5
701,368 - AO356_03135 0.40 +1.0
701,368 - AO356_03135 0.40 +0.8
701,368 - AO356_03135 0.40 -0.2
701,368 - AO356_03135 0.40 +0.8
701,415 + AO356_03135 0.45 -1.3

Or see this region's nucleotide sequence