Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS36765

Experiment: L-Malic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS36755 and RR42_RS36760 are separated by 2 nucleotidesRR42_RS36760 and RR42_RS36765 are separated by 26 nucleotidesRR42_RS36765 and RR42_RS36770 are separated by 109 nucleotidesRR42_RS36770 and RR42_RS36775 are separated by 2 nucleotides RR42_RS36755: RR42_RS36755 - hypothetical protein, at 3,701,100 to 3,701,675 _RS36755 RR42_RS36760: RR42_RS36760 - hypothetical protein, at 3,701,678 to 3,702,298 _RS36760 RR42_RS36765: RR42_RS36765 - cbb3-type cytochrome C oxidase subunit III, at 3,702,325 to 3,702,930 _RS36765 RR42_RS36770: RR42_RS36770 - hypothetical protein, at 3,703,040 to 3,703,684 _RS36770 RR42_RS36775: RR42_RS36775 - membrane protein, at 3,703,687 to 3,705,333 _RS36775 Position (kb) 3702 3703Strain fitness (log2 ratio) -1 0 1at 3701.576 kb on + strand, within RR42_RS36755at 3701.576 kb on + strand, within RR42_RS36755at 3701.576 kb on + strand, within RR42_RS36755at 3701.576 kb on + strand, within RR42_RS36755at 3701.576 kb on + strand, within RR42_RS36755at 3701.577 kb on - strand, within RR42_RS36755at 3701.577 kb on - strand, within RR42_RS36755at 3701.733 kb on + strandat 3701.734 kb on - strandat 3701.913 kb on + strand, within RR42_RS36760at 3701.913 kb on + strand, within RR42_RS36760at 3701.913 kb on + strand, within RR42_RS36760at 3701.914 kb on - strand, within RR42_RS36760at 3702.542 kb on + strand, within RR42_RS36765at 3702.542 kb on + strand, within RR42_RS36765at 3702.542 kb on + strand, within RR42_RS36765at 3702.543 kb on - strand, within RR42_RS36765at 3702.543 kb on - strand, within RR42_RS36765at 3702.543 kb on - strand, within RR42_RS36765at 3702.543 kb on - strand, within RR42_RS36765at 3702.543 kb on - strand, within RR42_RS36765at 3702.543 kb on - strand, within RR42_RS36765at 3702.543 kb on - strand, within RR42_RS36765at 3702.709 kb on + strand, within RR42_RS36765at 3702.710 kb on - strand, within RR42_RS36765at 3702.710 kb on - strand, within RR42_RS36765at 3702.710 kb on - strand, within RR42_RS36765at 3702.815 kb on + strand, within RR42_RS36765at 3702.909 kb on + strandat 3703.140 kb on + strand, within RR42_RS36770at 3703.299 kb on + strand, within RR42_RS36770at 3703.299 kb on + strand, within RR42_RS36770at 3703.300 kb on - strand, within RR42_RS36770at 3703.314 kb on + strand, within RR42_RS36770at 3703.419 kb on + strand, within RR42_RS36770at 3703.420 kb on - strand, within RR42_RS36770at 3703.527 kb on + strand, within RR42_RS36770at 3703.560 kb on + strand, within RR42_RS36770at 3703.561 kb on - strand, within RR42_RS36770at 3703.920 kb on - strand, within RR42_RS36775at 3703.920 kb on - strand, within RR42_RS36775at 3703.920 kb on - strand, within RR42_RS36775at 3703.920 kb on - strand, within RR42_RS36775

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
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3,701,576 + RR42_RS36755 0.83 +0.6
3,701,576 + RR42_RS36755 0.83 -0.4
3,701,576 + RR42_RS36755 0.83 +0.1
3,701,576 + RR42_RS36755 0.83 +0.3
3,701,576 + RR42_RS36755 0.83 -0.5
3,701,577 - RR42_RS36755 0.83 +0.5
3,701,577 - RR42_RS36755 0.83 -0.7
3,701,733 + +0.6
3,701,734 - -0.1
3,701,913 + RR42_RS36760 0.38 +0.3
3,701,913 + RR42_RS36760 0.38 +0.6
3,701,913 + RR42_RS36760 0.38 -0.6
3,701,914 - RR42_RS36760 0.38 +0.1
3,702,542 + RR42_RS36765 0.36 -0.3
3,702,542 + RR42_RS36765 0.36 -0.3
3,702,542 + RR42_RS36765 0.36 +0.8
3,702,543 - RR42_RS36765 0.36 +0.6
3,702,543 - RR42_RS36765 0.36 +0.6
3,702,543 - RR42_RS36765 0.36 -0.2
3,702,543 - RR42_RS36765 0.36 +0.3
3,702,543 - RR42_RS36765 0.36 +0.6
3,702,543 - RR42_RS36765 0.36 +0.4
3,702,543 - RR42_RS36765 0.36 +1.0
3,702,709 + RR42_RS36765 0.63 -0.8
3,702,710 - RR42_RS36765 0.64 +0.4
3,702,710 - RR42_RS36765 0.64 +0.3
3,702,710 - RR42_RS36765 0.64 -0.3
3,702,815 + RR42_RS36765 0.81 +0.8
3,702,909 + +0.9
3,703,140 + RR42_RS36770 0.16 +1.6
3,703,299 + RR42_RS36770 0.40 +0.9
3,703,299 + RR42_RS36770 0.40 -0.1
3,703,300 - RR42_RS36770 0.40 +1.1
3,703,314 + RR42_RS36770 0.42 +0.5
3,703,419 + RR42_RS36770 0.59 +0.2
3,703,420 - RR42_RS36770 0.59 +0.3
3,703,527 + RR42_RS36770 0.76 +0.5
3,703,560 + RR42_RS36770 0.81 +0.1
3,703,561 - RR42_RS36770 0.81 +0.2
3,703,920 - RR42_RS36775 0.14 -0.3
3,703,920 - RR42_RS36775 0.14 -1.1
3,703,920 - RR42_RS36775 0.14 +0.4
3,703,920 - RR42_RS36775 0.14 +0.7

Or see this region's nucleotide sequence