Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS21590 and RR42_RS21595 overlap by 4 nucleotides RR42_RS21595 and RR42_RS21600 are separated by 144 nucleotides RR42_RS21600 and RR42_RS21605 overlap by 20 nucleotides RR42_RS21605 and RR42_RS21610 are separated by 443 nucleotides
RR42_RS21590: RR42_RS21590 - hypothetical protein, at 170,315 to 173,065
_RS21590
RR42_RS21595: RR42_RS21595 - IclR family transcriptional regulator, at 173,062 to 173,826
_RS21595
RR42_RS21600: RR42_RS21600 - inorganic pyrophosphatase/exopolyphosphatase, at 173,971 to 174,999
_RS21600
RR42_RS21605: RR42_RS21605 - S-adenosylhomocysteine hydrolase, at 174,980 to 175,387
_RS21605
RR42_RS21610: RR42_RS21610 - MFS transporter permease, at 175,831 to 177,141
_RS21610
Position (kb) 173
174
175 Strain fitness (log2 ratio) -1
0
1
2 at 172.976 kb on + strand at 172.977 kb on - strand at 172.977 kb on - strand at 173.646 kb on + strand, within RR42_RS21595 at 173.646 kb on - strand, within RR42_RS21595 at 173.784 kb on - strand at 173.826 kb on + strand at 173.826 kb on + strand at 173.826 kb on + strand at 173.869 kb on + strand at 174.166 kb on + strand, within RR42_RS21600 at 174.166 kb on + strand, within RR42_RS21600 at 174.242 kb on + strand, within RR42_RS21600 at 174.242 kb on + strand, within RR42_RS21600 at 174.243 kb on - strand, within RR42_RS21600 at 174.414 kb on - strand, within RR42_RS21600 at 174.518 kb on + strand, within RR42_RS21600 at 174.519 kb on - strand, within RR42_RS21600 at 174.536 kb on + strand, within RR42_RS21600 at 174.540 kb on - strand, within RR42_RS21600 at 174.680 kb on + strand, within RR42_RS21600 at 174.681 kb on - strand, within RR42_RS21600 at 174.803 kb on - strand, within RR42_RS21600 at 174.819 kb on + strand, within RR42_RS21600 at 174.820 kb on - strand, within RR42_RS21600 at 174.999 kb on + strand at 175.101 kb on + strand, within RR42_RS21605 at 175.101 kb on + strand, within RR42_RS21605 at 175.101 kb on + strand, within RR42_RS21605 at 175.101 kb on + strand, within RR42_RS21605 at 175.418 kb on + strand at 175.418 kb on + strand at 175.427 kb on + strand at 175.428 kb on - strand at 175.593 kb on + strand at 175.593 kb on + strand at 175.593 kb on + strand at 175.593 kb on + strand at 175.594 kb on - strand at 175.594 kb on - strand at 175.594 kb on - strand at 175.594 kb on - strand at 175.594 kb on - strand at 175.705 kb on + strand at 175.705 kb on + strand at 175.706 kb on - strand at 175.706 kb on - strand at 175.706 kb on - strand at 175.709 kb on + strand at 175.709 kb on + strand at 175.710 kb on - strand at 175.956 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 172,976 + -1.5 172,977 - +0.9 172,977 - +0.8 173,646 + RR42_RS21595 0.76 -0.8 173,646 - RR42_RS21595 0.76 -1.2 173,784 - +0.1 173,826 + -0.5 173,826 + +0.4 173,826 + -1.2 173,869 + -0.4 174,166 + RR42_RS21600 0.19 -1.5 174,166 + RR42_RS21600 0.19 -0.0 174,242 + RR42_RS21600 0.26 -0.6 174,242 + RR42_RS21600 0.26 -0.4 174,243 - RR42_RS21600 0.26 +0.4 174,414 - RR42_RS21600 0.43 +0.2 174,518 + RR42_RS21600 0.53 -0.3 174,519 - RR42_RS21600 0.53 -0.2 174,536 + RR42_RS21600 0.55 -0.3 174,540 - RR42_RS21600 0.55 +0.4 174,680 + RR42_RS21600 0.69 -1.0 174,681 - RR42_RS21600 0.69 -0.2 174,803 - RR42_RS21600 0.81 -0.9 174,819 + RR42_RS21600 0.82 +0.6 174,820 - RR42_RS21600 0.83 +0.4 174,999 + -1.0 175,101 + RR42_RS21605 0.30 -0.4 175,101 + RR42_RS21605 0.30 +0.5 175,101 + RR42_RS21605 0.30 -0.8 175,101 + RR42_RS21605 0.30 +0.3 175,418 + +0.7 175,418 + -1.2 175,427 + +0.1 175,428 - -1.5 175,593 + +0.5 175,593 + -0.2 175,593 + +0.2 175,593 + +1.3 175,594 - +0.6 175,594 - +0.3 175,594 - -1.0 175,594 - +0.2 175,594 - +1.2 175,705 + -0.6 175,705 + +0.2 175,706 - +0.0 175,706 - +0.2 175,706 - -0.7 175,709 + +2.5 175,709 + +0.4 175,710 - -0.0 175,956 - +0.8
Or see this region's nucleotide sequence