Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS21590 and RR42_RS21595 overlap by 4 nucleotides RR42_RS21595 and RR42_RS21600 are separated by 144 nucleotides
RR42_RS21590: RR42_RS21590 - hypothetical protein, at 170,315 to 173,065
_RS21590
RR42_RS21595: RR42_RS21595 - IclR family transcriptional regulator, at 173,062 to 173,826
_RS21595
RR42_RS21600: RR42_RS21600 - inorganic pyrophosphatase/exopolyphosphatase, at 173,971 to 174,999
_RS21600
Position (kb) 173
174 Strain fitness (log2 ratio) -1
0
1 at 172.128 kb on + strand, within RR42_RS21590 at 172.129 kb on - strand, within RR42_RS21590 at 172.155 kb on - strand, within RR42_RS21590 at 172.448 kb on + strand, within RR42_RS21590 at 172.451 kb on + strand, within RR42_RS21590 at 172.451 kb on + strand, within RR42_RS21590 at 172.505 kb on + strand, within RR42_RS21590 at 172.505 kb on + strand, within RR42_RS21590 at 172.505 kb on + strand, within RR42_RS21590 at 172.544 kb on + strand, within RR42_RS21590 at 172.545 kb on - strand, within RR42_RS21590 at 172.613 kb on + strand, within RR42_RS21590 at 172.613 kb on + strand, within RR42_RS21590 at 172.901 kb on + strand at 172.976 kb on + strand at 172.977 kb on - strand at 172.977 kb on - strand at 173.646 kb on + strand, within RR42_RS21595 at 173.646 kb on - strand, within RR42_RS21595 at 173.784 kb on - strand at 173.826 kb on + strand at 173.826 kb on + strand at 173.826 kb on + strand at 173.869 kb on + strand at 174.166 kb on + strand, within RR42_RS21600 at 174.166 kb on + strand, within RR42_RS21600 at 174.242 kb on + strand, within RR42_RS21600 at 174.242 kb on + strand, within RR42_RS21600 at 174.243 kb on - strand, within RR42_RS21600 at 174.414 kb on - strand, within RR42_RS21600 at 174.518 kb on + strand, within RR42_RS21600 at 174.519 kb on - strand, within RR42_RS21600 at 174.536 kb on + strand, within RR42_RS21600 at 174.540 kb on - strand, within RR42_RS21600 at 174.680 kb on + strand, within RR42_RS21600 at 174.681 kb on - strand, within RR42_RS21600 at 174.803 kb on - strand, within RR42_RS21600 at 174.819 kb on + strand, within RR42_RS21600 at 174.820 kb on - strand, within RR42_RS21600
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 172,128 + RR42_RS21590 0.66 +0.1 172,129 - RR42_RS21590 0.66 +0.2 172,155 - RR42_RS21590 0.67 -0.5 172,448 + RR42_RS21590 0.78 -0.9 172,451 + RR42_RS21590 0.78 +0.4 172,451 + RR42_RS21590 0.78 -0.4 172,505 + RR42_RS21590 0.80 -0.5 172,505 + RR42_RS21590 0.80 +0.4 172,505 + RR42_RS21590 0.80 +0.2 172,544 + RR42_RS21590 0.81 +1.0 172,545 - RR42_RS21590 0.81 -0.1 172,613 + RR42_RS21590 0.84 -0.4 172,613 + RR42_RS21590 0.84 -1.3 172,901 + +0.0 172,976 + -1.5 172,977 - +0.9 172,977 - +0.8 173,646 + RR42_RS21595 0.76 -0.8 173,646 - RR42_RS21595 0.76 -1.2 173,784 - +0.1 173,826 + -0.5 173,826 + +0.4 173,826 + -1.2 173,869 + -0.4 174,166 + RR42_RS21600 0.19 -1.5 174,166 + RR42_RS21600 0.19 -0.0 174,242 + RR42_RS21600 0.26 -0.6 174,242 + RR42_RS21600 0.26 -0.4 174,243 - RR42_RS21600 0.26 +0.4 174,414 - RR42_RS21600 0.43 +0.2 174,518 + RR42_RS21600 0.53 -0.3 174,519 - RR42_RS21600 0.53 -0.2 174,536 + RR42_RS21600 0.55 -0.3 174,540 - RR42_RS21600 0.55 +0.4 174,680 + RR42_RS21600 0.69 -1.0 174,681 - RR42_RS21600 0.69 -0.2 174,803 - RR42_RS21600 0.81 -0.9 174,819 + RR42_RS21600 0.82 +0.6 174,820 - RR42_RS21600 0.83 +0.4
Or see this region's nucleotide sequence