Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS21035 and RR42_RS21040 are separated by 67 nucleotides RR42_RS21040 and RR42_RS21045 are separated by 652 nucleotides RR42_RS21045 and RR42_RS21050 are separated by 125 nucleotides RR42_RS21050 and RR42_RS21055 are separated by 123 nucleotides
RR42_RS21035: RR42_RS21035 - GntR family transcriptional regulator, at 45,692 to 46,408
_RS21035
RR42_RS21040: RR42_RS21040 - hypothetical protein, at 46,476 to 46,667
_RS21040
RR42_RS21045: RR42_RS21045 - cyanate hydratase, at 47,320 to 47,763
_RS21045
RR42_RS21050: RR42_RS21050 - hypothetical protein, at 47,889 to 48,107
_RS21050
RR42_RS21055: RR42_RS21055 - excisionase, at 48,231 to 48,836
_RS21055
Position (kb) 47
48 Strain fitness (log2 ratio) -1
0
1
2 at 46.363 kb on - strand at 46.633 kb on + strand, within RR42_RS21040 at 46.724 kb on - strand at 46.736 kb on - strand at 46.736 kb on - strand at 46.908 kb on - strand at 47.173 kb on + strand at 47.174 kb on - strand at 47.174 kb on - strand at 47.335 kb on - strand at 47.533 kb on + strand, within RR42_RS21045 at 47.533 kb on + strand, within RR42_RS21045 at 47.534 kb on - strand, within RR42_RS21045 at 47.534 kb on - strand, within RR42_RS21045 at 47.587 kb on + strand, within RR42_RS21045 at 47.587 kb on + strand, within RR42_RS21045 at 47.587 kb on + strand, within RR42_RS21045 at 47.587 kb on + strand, within RR42_RS21045 at 47.587 kb on + strand, within RR42_RS21045 at 47.588 kb on - strand, within RR42_RS21045 at 47.588 kb on - strand, within RR42_RS21045 at 47.588 kb on - strand, within RR42_RS21045 at 47.606 kb on - strand, within RR42_RS21045 at 47.606 kb on - strand, within RR42_RS21045 at 47.606 kb on - strand, within RR42_RS21045 at 47.749 kb on + strand at 47.758 kb on + strand at 47.863 kb on - strand at 48.042 kb on + strand, within RR42_RS21050 at 48.043 kb on - strand, within RR42_RS21050 at 48.071 kb on + strand, within RR42_RS21050 at 48.072 kb on - strand, within RR42_RS21050 at 48.072 kb on - strand, within RR42_RS21050 at 48.140 kb on + strand at 48.184 kb on + strand at 48.185 kb on - strand at 48.232 kb on + strand at 48.317 kb on + strand, within RR42_RS21055 at 48.318 kb on - strand, within RR42_RS21055 at 48.509 kb on - strand, within RR42_RS21055 at 48.607 kb on - strand, within RR42_RS21055
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 46,363 - +0.3 46,633 + RR42_RS21040 0.82 -0.2 46,724 - +0.5 46,736 - +0.2 46,736 - -0.3 46,908 - -1.1 47,173 + -0.1 47,174 - -0.8 47,174 - -0.3 47,335 - -0.2 47,533 + RR42_RS21045 0.48 -0.1 47,533 + RR42_RS21045 0.48 -0.1 47,534 - RR42_RS21045 0.48 +0.3 47,534 - RR42_RS21045 0.48 +0.2 47,587 + RR42_RS21045 0.60 -0.5 47,587 + RR42_RS21045 0.60 +0.9 47,587 + RR42_RS21045 0.60 +0.9 47,587 + RR42_RS21045 0.60 +0.5 47,587 + RR42_RS21045 0.60 -0.1 47,588 - RR42_RS21045 0.60 +0.3 47,588 - RR42_RS21045 0.60 +1.1 47,588 - RR42_RS21045 0.60 +0.4 47,606 - RR42_RS21045 0.64 +0.2 47,606 - RR42_RS21045 0.64 +0.7 47,606 - RR42_RS21045 0.64 +2.1 47,749 + -0.1 47,758 + -0.4 47,863 - +0.7 48,042 + RR42_RS21050 0.70 +0.1 48,043 - RR42_RS21050 0.70 -0.2 48,071 + RR42_RS21050 0.83 -1.1 48,072 - RR42_RS21050 0.84 -1.0 48,072 - RR42_RS21050 0.84 +0.8 48,140 + -0.9 48,184 + +0.2 48,185 - +0.9 48,232 + -0.9 48,317 + RR42_RS21055 0.14 -0.1 48,318 - RR42_RS21055 0.14 -0.7 48,509 - RR42_RS21055 0.46 -0.2 48,607 - RR42_RS21055 0.62 +1.1
Or see this region's nucleotide sequence