Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS19255

Experiment: L-Malic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS19240 and RR42_RS19245 are separated by 2 nucleotidesRR42_RS19245 and RR42_RS19250 overlap by 4 nucleotidesRR42_RS19250 and RR42_RS19255 are separated by 11 nucleotidesRR42_RS19255 and RR42_RS19260 are separated by 236 nucleotidesRR42_RS19260 and RR42_RS19265 are separated by 1 nucleotides RR42_RS19240: RR42_RS19240 - 50S ribosomal protein L2, at 4,155,745 to 4,156,575 _RS19240 RR42_RS19245: RR42_RS19245 - 50S ribosomal protein L23, at 4,156,578 to 4,156,892 _RS19245 RR42_RS19250: RR42_RS19250 - 50S ribosomal protein L4, at 4,156,889 to 4,157,509 _RS19250 RR42_RS19255: RR42_RS19255 - 50S ribosomal protein L3, at 4,157,521 to 4,158,171 _RS19255 RR42_RS19260: RR42_RS19260 - nitrilotriacetate monooxygenase, at 4,158,408 to 4,158,899 _RS19260 RR42_RS19265: RR42_RS19265 - alanine-phosphoribitol ligase, at 4,158,901 to 4,160,142 _RS19265 Position (kb) 4157 4158 4159Strain fitness (log2 ratio) -1 0 1at 4158.358 kb on + strandat 4158.358 kb on + strandat 4158.358 kb on + strandat 4158.359 kb on - strandat 4158.359 kb on - strandat 4158.359 kb on - strandat 4158.359 kb on - strandat 4158.409 kb on + strandat 4158.565 kb on + strand, within RR42_RS19260at 4158.565 kb on + strand, within RR42_RS19260at 4158.566 kb on - strand, within RR42_RS19260at 4158.566 kb on - strand, within RR42_RS19260at 4159.118 kb on + strand, within RR42_RS19265at 4159.118 kb on + strand, within RR42_RS19265at 4159.119 kb on - strand, within RR42_RS19265

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
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4,158,358 + -0.9
4,158,358 + -0.2
4,158,358 + +1.5
4,158,359 - -0.2
4,158,359 - +0.7
4,158,359 - +1.7
4,158,359 - +0.5
4,158,409 + -0.1
4,158,565 + RR42_RS19260 0.32 -0.3
4,158,565 + RR42_RS19260 0.32 -1.2
4,158,566 - RR42_RS19260 0.32 +0.2
4,158,566 - RR42_RS19260 0.32 -0.7
4,159,118 + RR42_RS19265 0.17 -0.3
4,159,118 + RR42_RS19265 0.17 +1.3
4,159,119 - RR42_RS19265 0.18 +0.7

Or see this region's nucleotide sequence