Strain Fitness in Pantoea sp. MT58 around IAI47_20055

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_20050 and IAI47_20055 are separated by 208 nucleotidesIAI47_20055 and IAI47_20060 overlap by 4 nucleotidesIAI47_20060 and IAI47_20065 are separated by 156 nucleotides IAI47_20050: IAI47_20050 - ABC transporter substrate-binding protein, at 242,088 to 242,987 _20050 IAI47_20055: IAI47_20055 - non-canonical purine NTP pyrophosphatase, at 243,196 to 243,756 _20055 IAI47_20060: IAI47_20060 - SIR2 family protein, at 243,753 to 244,547 _20060 IAI47_20065: IAI47_20065 - YebG family protein, at 244,704 to 245,045 _20065 Position (kb) 243 244Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 242.213 kb on + strand, within IAI47_20050at 242.372 kb on - strand, within IAI47_20050at 242.433 kb on + strand, within IAI47_20050at 242.433 kb on + strand, within IAI47_20050at 242.433 kb on + strand, within IAI47_20050at 242.453 kb on + strand, within IAI47_20050at 242.454 kb on - strand, within IAI47_20050at 242.454 kb on - strand, within IAI47_20050at 242.455 kb on + strand, within IAI47_20050at 242.455 kb on + strand, within IAI47_20050at 242.455 kb on + strand, within IAI47_20050at 242.456 kb on - strand, within IAI47_20050at 242.456 kb on - strand, within IAI47_20050at 242.555 kb on + strand, within IAI47_20050at 242.555 kb on + strand, within IAI47_20050at 242.555 kb on + strand, within IAI47_20050at 242.555 kb on + strand, within IAI47_20050at 242.556 kb on - strand, within IAI47_20050at 242.556 kb on - strand, within IAI47_20050at 242.556 kb on - strand, within IAI47_20050at 242.570 kb on + strand, within IAI47_20050at 242.570 kb on + strand, within IAI47_20050at 242.571 kb on - strand, within IAI47_20050at 242.571 kb on - strand, within IAI47_20050at 242.588 kb on + strand, within IAI47_20050at 242.589 kb on - strand, within IAI47_20050at 242.620 kb on + strand, within IAI47_20050at 242.620 kb on + strand, within IAI47_20050at 242.620 kb on + strand, within IAI47_20050at 242.621 kb on - strand, within IAI47_20050at 242.621 kb on - strand, within IAI47_20050at 242.679 kb on + strand, within IAI47_20050at 242.679 kb on + strand, within IAI47_20050at 242.679 kb on + strand, within IAI47_20050at 242.680 kb on - strand, within IAI47_20050at 242.680 kb on - strand, within IAI47_20050at 242.684 kb on + strand, within IAI47_20050at 242.684 kb on + strand, within IAI47_20050at 242.684 kb on + strand, within IAI47_20050at 242.685 kb on - strand, within IAI47_20050at 242.685 kb on - strand, within IAI47_20050at 242.904 kb on + strandat 242.945 kb on + strandat 242.945 kb on + strandat 242.945 kb on + strandat 242.945 kb on + strandat 242.945 kb on + strandat 242.945 kb on + strandat 242.946 kb on - strandat 242.946 kb on - strandat 242.946 kb on - strandat 242.946 kb on - strandat 242.948 kb on + strandat 242.949 kb on - strandat 242.963 kb on - strandat 242.983 kb on - strandat 243.110 kb on + strandat 243.110 kb on + strandat 243.110 kb on + strandat 243.111 kb on - strandat 243.111 kb on - strandat 243.111 kb on - strandat 243.125 kb on + strandat 243.125 kb on + strandat 243.133 kb on + strandat 243.134 kb on - strandat 243.134 kb on - strandat 243.177 kb on + strandat 243.177 kb on + strandat 243.178 kb on - strandat 243.178 kb on - strandat 243.178 kb on - strandat 243.178 kb on - strandat 243.178 kb on - strandat 243.181 kb on + strandat 243.251 kb on + strandat 243.251 kb on + strandat 243.345 kb on + strand, within IAI47_20055at 243.345 kb on + strand, within IAI47_20055at 243.345 kb on + strand, within IAI47_20055at 243.345 kb on + strand, within IAI47_20055at 243.346 kb on - strand, within IAI47_20055at 243.346 kb on - strand, within IAI47_20055at 243.346 kb on - strand, within IAI47_20055at 243.400 kb on + strand, within IAI47_20055at 243.400 kb on + strand, within IAI47_20055at 243.401 kb on - strand, within IAI47_20055at 243.401 kb on - strand, within IAI47_20055at 243.441 kb on + strand, within IAI47_20055at 243.441 kb on + strand, within IAI47_20055at 243.442 kb on - strand, within IAI47_20055at 243.442 kb on - strand, within IAI47_20055at 243.517 kb on - strand, within IAI47_20055at 243.533 kb on - strand, within IAI47_20055at 243.553 kb on + strand, within IAI47_20055at 243.633 kb on + strand, within IAI47_20055at 243.634 kb on - strand, within IAI47_20055at 243.646 kb on + strand, within IAI47_20055at 243.646 kb on + strand, within IAI47_20055at 243.647 kb on - strand, within IAI47_20055at 243.724 kb on - strandat 243.731 kb on + strandat 243.732 kb on - strandat 243.768 kb on - strandat 243.768 kb on - strandat 243.768 kb on - strandat 243.778 kb on - strandat 243.778 kb on - strandat 243.816 kb on - strandat 243.882 kb on + strand, within IAI47_20060at 243.882 kb on + strand, within IAI47_20060at 243.902 kb on + strand, within IAI47_20060at 243.902 kb on + strand, within IAI47_20060at 243.902 kb on + strand, within IAI47_20060at 243.902 kb on + strand, within IAI47_20060at 243.902 kb on + strand, within IAI47_20060at 243.902 kb on + strand, within IAI47_20060at 243.902 kb on + strand, within IAI47_20060at 243.903 kb on - strand, within IAI47_20060at 243.903 kb on - strand, within IAI47_20060at 243.903 kb on - strand, within IAI47_20060at 243.903 kb on - strand, within IAI47_20060at 243.906 kb on + strand, within IAI47_20060at 243.906 kb on + strand, within IAI47_20060at 243.906 kb on + strand, within IAI47_20060at 243.907 kb on - strand, within IAI47_20060at 243.907 kb on - strand, within IAI47_20060at 243.936 kb on + strand, within IAI47_20060at 243.936 kb on + strand, within IAI47_20060at 243.936 kb on + strand, within IAI47_20060at 243.936 kb on + strand, within IAI47_20060at 243.936 kb on + strand, within IAI47_20060at 243.936 kb on + strand, within IAI47_20060at 243.937 kb on - strand, within IAI47_20060at 243.937 kb on - strand, within IAI47_20060at 243.937 kb on - strand, within IAI47_20060at 243.937 kb on - strand, within IAI47_20060at 243.937 kb on - strand, within IAI47_20060at 243.937 kb on - strand, within IAI47_20060at 244.031 kb on + strand, within IAI47_20060at 244.032 kb on - strand, within IAI47_20060at 244.032 kb on - strand, within IAI47_20060at 244.040 kb on + strand, within IAI47_20060at 244.040 kb on + strand, within IAI47_20060at 244.066 kb on - strand, within IAI47_20060at 244.066 kb on - strand, within IAI47_20060at 244.073 kb on + strand, within IAI47_20060at 244.073 kb on + strand, within IAI47_20060at 244.073 kb on + strand, within IAI47_20060at 244.074 kb on - strand, within IAI47_20060at 244.074 kb on - strandat 244.074 kb on - strand, within IAI47_20060at 244.077 kb on + strand, within IAI47_20060at 244.077 kb on + strand, within IAI47_20060at 244.077 kb on + strand, within IAI47_20060at 244.078 kb on - strand, within IAI47_20060at 244.078 kb on - strand, within IAI47_20060at 244.078 kb on - strand, within IAI47_20060at 244.122 kb on + strand, within IAI47_20060at 244.122 kb on + strand, within IAI47_20060at 244.122 kb on + strand, within IAI47_20060at 244.122 kb on + strand, within IAI47_20060at 244.123 kb on - strand, within IAI47_20060at 244.123 kb on - strand, within IAI47_20060at 244.123 kb on - strand, within IAI47_20060at 244.123 kb on - strand, within IAI47_20060at 244.123 kb on - strand, within IAI47_20060at 244.123 kb on - strand, within IAI47_20060at 244.123 kb on - strand, within IAI47_20060at 244.125 kb on + strand, within IAI47_20060at 244.125 kb on + strand, within IAI47_20060at 244.125 kb on + strand, within IAI47_20060at 244.125 kb on + strand, within IAI47_20060at 244.126 kb on - strand, within IAI47_20060at 244.127 kb on + strand, within IAI47_20060at 244.127 kb on + strand, within IAI47_20060at 244.127 kb on + strand, within IAI47_20060at 244.128 kb on - strand, within IAI47_20060at 244.128 kb on - strand, within IAI47_20060at 244.128 kb on - strand, within IAI47_20060at 244.128 kb on - strand, within IAI47_20060at 244.128 kb on - strand, within IAI47_20060at 244.169 kb on + strand, within IAI47_20060at 244.170 kb on - strand, within IAI47_20060at 244.239 kb on + strand, within IAI47_20060at 244.239 kb on + strand, within IAI47_20060at 244.277 kb on + strand, within IAI47_20060at 244.277 kb on + strand, within IAI47_20060at 244.278 kb on - strand, within IAI47_20060at 244.278 kb on - strand, within IAI47_20060at 244.278 kb on - strand, within IAI47_20060at 244.278 kb on - strand, within IAI47_20060at 244.416 kb on + strand, within IAI47_20060at 244.417 kb on - strand, within IAI47_20060at 244.433 kb on + strand, within IAI47_20060at 244.434 kb on - strand, within IAI47_20060at 244.434 kb on - strand, within IAI47_20060at 244.434 kb on - strand, within IAI47_20060at 244.546 kb on - strandat 244.546 kb on - strandat 244.546 kb on - strandat 244.636 kb on - strandat 244.636 kb on - strandat 244.636 kb on - strandat 244.636 kb on - strandat 244.636 kb on - strandat 244.668 kb on - strandat 244.729 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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242,213 + IAI47_20050 0.14 +0.9
242,372 - IAI47_20050 0.32 +2.8
242,433 + IAI47_20050 0.38 +0.5
242,433 + IAI47_20050 0.38 -1.7
242,433 + IAI47_20050 0.38 +2.0
242,453 + IAI47_20050 0.41 +0.8
242,454 - IAI47_20050 0.41 +0.1
242,454 - IAI47_20050 0.41 +2.5
242,455 + IAI47_20050 0.41 +0.2
242,455 + IAI47_20050 0.41 +0.9
242,455 + IAI47_20050 0.41 -0.6
242,456 - IAI47_20050 0.41 -1.9
242,456 - IAI47_20050 0.41 -0.3
242,555 + IAI47_20050 0.52 -1.5
242,555 + IAI47_20050 0.52 +0.7
242,555 + IAI47_20050 0.52 +0.8
242,555 + IAI47_20050 0.52 -0.7
242,556 - IAI47_20050 0.52 +0.5
242,556 - IAI47_20050 0.52 -1.3
242,556 - IAI47_20050 0.52 +0.8
242,570 + IAI47_20050 0.54 -0.2
242,570 + IAI47_20050 0.54 -0.9
242,571 - IAI47_20050 0.54 -0.3
242,571 - IAI47_20050 0.54 -0.9
242,588 + IAI47_20050 0.56 -0.6
242,589 - IAI47_20050 0.56 +1.0
242,620 + IAI47_20050 0.59 +0.2
242,620 + IAI47_20050 0.59 +1.4
242,620 + IAI47_20050 0.59 -0.3
242,621 - IAI47_20050 0.59 -1.9
242,621 - IAI47_20050 0.59 +1.1
242,679 + IAI47_20050 0.66 +3.4
242,679 + IAI47_20050 0.66 +1.1
242,679 + IAI47_20050 0.66 +1.1
242,680 - IAI47_20050 0.66 +2.1
242,680 - IAI47_20050 0.66 -0.7
242,684 + IAI47_20050 0.66 -0.2
242,684 + IAI47_20050 0.66 +0.1
242,684 + IAI47_20050 0.66 +1.3
242,685 - IAI47_20050 0.66 +1.2
242,685 - IAI47_20050 0.66 +0.0
242,904 + +1.2
242,945 + -1.1
242,945 + -2.4
242,945 + -0.6
242,945 + +1.5
242,945 + -0.6
242,945 + -0.7
242,946 - -0.0
242,946 - +0.4
242,946 - -1.8
242,946 - +0.2
242,948 + +2.1
242,949 - +0.6
242,963 - -1.3
242,983 - +1.5
243,110 + +0.9
243,110 + +0.6
243,110 + -1.9
243,111 - -2.3
243,111 - +0.9
243,111 - -0.2
243,125 + -0.4
243,125 + +0.2
243,133 + +0.6
243,134 - +1.0
243,134 - +0.6
243,177 + +0.1
243,177 + +0.6
243,178 - +0.5
243,178 - -0.7
243,178 - -0.9
243,178 - -1.5
243,178 - -1.0
243,181 + -0.4
243,251 + -0.4
243,251 + -1.1
243,345 + IAI47_20055 0.27 -1.4
243,345 + IAI47_20055 0.27 -1.8
243,345 + IAI47_20055 0.27 -0.0
243,345 + IAI47_20055 0.27 -1.4
243,346 - IAI47_20055 0.27 -0.4
243,346 - IAI47_20055 0.27 +2.0
243,346 - IAI47_20055 0.27 -1.9
243,400 + IAI47_20055 0.36 +0.3
243,400 + IAI47_20055 0.36 -0.4
243,401 - IAI47_20055 0.37 -0.1
243,401 - IAI47_20055 0.37 -2.1
243,441 + IAI47_20055 0.44 +1.1
243,441 + IAI47_20055 0.44 -1.9
243,442 - IAI47_20055 0.44 -0.2
243,442 - IAI47_20055 0.44 -1.3
243,517 - IAI47_20055 0.57 -0.5
243,533 - IAI47_20055 0.60 +0.5
243,553 + IAI47_20055 0.64 +0.3
243,633 + IAI47_20055 0.78 -0.9
243,634 - IAI47_20055 0.78 +0.5
243,646 + IAI47_20055 0.80 -0.5
243,646 + IAI47_20055 0.80 -1.2
243,647 - IAI47_20055 0.80 -1.9
243,724 - -0.2
243,731 + +0.4
243,732 - +1.3
243,768 - -0.6
243,768 - -2.6
243,768 - -0.8
243,778 - -0.4
243,778 - +2.3
243,816 - +0.1
243,882 + IAI47_20060 0.16 +0.2
243,882 + IAI47_20060 0.16 -0.1
243,902 + IAI47_20060 0.19 -1.3
243,902 + IAI47_20060 0.19 +2.2
243,902 + IAI47_20060 0.19 -3.3
243,902 + IAI47_20060 0.19 -0.2
243,902 + IAI47_20060 0.19 +1.1
243,902 + IAI47_20060 0.19 +0.5
243,902 + IAI47_20060 0.19 +0.1
243,903 - IAI47_20060 0.19 +1.0
243,903 - IAI47_20060 0.19 -0.5
243,903 - IAI47_20060 0.19 -0.8
243,903 - IAI47_20060 0.19 -0.1
243,906 + IAI47_20060 0.19 -1.4
243,906 + IAI47_20060 0.19 +0.6
243,906 + IAI47_20060 0.19 -0.2
243,907 - IAI47_20060 0.19 -1.2
243,907 - IAI47_20060 0.19 -1.0
243,936 + IAI47_20060 0.23 -0.7
243,936 + IAI47_20060 0.23 -1.9
243,936 + IAI47_20060 0.23 -1.0
243,936 + IAI47_20060 0.23 -0.8
243,936 + IAI47_20060 0.23 -0.0
243,936 + IAI47_20060 0.23 -2.0
243,937 - IAI47_20060 0.23 -3.0
243,937 - IAI47_20060 0.23 -1.2
243,937 - IAI47_20060 0.23 +0.1
243,937 - IAI47_20060 0.23 -0.1
243,937 - IAI47_20060 0.23 -1.4
243,937 - IAI47_20060 0.23 +0.7
244,031 + IAI47_20060 0.35 +0.8
244,032 - IAI47_20060 0.35 +1.1
244,032 - IAI47_20060 0.35 +0.2
244,040 + IAI47_20060 0.36 -0.6
244,040 + IAI47_20060 0.36 -1.2
244,066 - IAI47_20060 0.39 +1.0
244,066 - IAI47_20060 0.39 -0.2
244,073 + IAI47_20060 0.40 +0.1
244,073 + IAI47_20060 0.40 -1.9
244,073 + IAI47_20060 0.40 +0.5
244,074 - IAI47_20060 0.40 -0.2
244,074 - +1.6
244,074 - IAI47_20060 0.40 +1.4
244,077 + IAI47_20060 0.41 -0.4
244,077 + IAI47_20060 0.41 +0.5
244,077 + IAI47_20060 0.41 +0.8
244,078 - IAI47_20060 0.41 -0.4
244,078 - IAI47_20060 0.41 -2.0
244,078 - IAI47_20060 0.41 -1.2
244,122 + IAI47_20060 0.46 +0.8
244,122 + IAI47_20060 0.46 +0.6
244,122 + IAI47_20060 0.46 -0.6
244,122 + IAI47_20060 0.46 -0.9
244,123 - IAI47_20060 0.47 +1.2
244,123 - IAI47_20060 0.47 +0.9
244,123 - IAI47_20060 0.47 -2.5
244,123 - IAI47_20060 0.47 -2.5
244,123 - IAI47_20060 0.47 -0.2
244,123 - IAI47_20060 0.47 -0.6
244,123 - IAI47_20060 0.47 +0.0
244,125 + IAI47_20060 0.47 +0.7
244,125 + IAI47_20060 0.47 -0.5
244,125 + IAI47_20060 0.47 +1.0
244,125 + IAI47_20060 0.47 +0.8
244,126 - IAI47_20060 0.47 +1.2
244,127 + IAI47_20060 0.47 -1.9
244,127 + IAI47_20060 0.47 +1.1
244,127 + IAI47_20060 0.47 +0.2
244,128 - IAI47_20060 0.47 -2.5
244,128 - IAI47_20060 0.47 -0.1
244,128 - IAI47_20060 0.47 -0.0
244,128 - IAI47_20060 0.47 -2.1
244,128 - IAI47_20060 0.47 +0.3
244,169 + IAI47_20060 0.52 +1.0
244,170 - IAI47_20060 0.52 -0.0
244,239 + IAI47_20060 0.61 +0.1
244,239 + IAI47_20060 0.61 -2.4
244,277 + IAI47_20060 0.66 +0.6
244,277 + IAI47_20060 0.66 +1.2
244,278 - IAI47_20060 0.66 +0.9
244,278 - IAI47_20060 0.66 +0.2
244,278 - IAI47_20060 0.66 +0.0
244,278 - IAI47_20060 0.66 +1.2
244,416 + IAI47_20060 0.83 +1.2
244,417 - IAI47_20060 0.84 +0.3
244,433 + IAI47_20060 0.86 -1.2
244,434 - IAI47_20060 0.86 +1.2
244,434 - IAI47_20060 0.86 -0.4
244,434 - IAI47_20060 0.86 +1.0
244,546 - -0.5
244,546 - -1.6
244,546 - +0.6
244,636 - +0.7
244,636 - +0.2
244,636 - -0.7
244,636 - +1.6
244,636 - -0.6
244,668 - -0.3
244,729 + -0.6

Or see this region's nucleotide sequence