Experiment: nitrite 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS22000 and HSERO_RS22005 are separated by 17 nucleotides HSERO_RS22005 and HSERO_RS22010 are separated by 126 nucleotides HSERO_RS22010 and HSERO_RS22015 are separated by 17 nucleotides HSERO_RS22015 and HSERO_RS22020 are separated by 86 nucleotides HSERO_RS22020 and HSERO_RS22025 are separated by 19 nucleotides
HSERO_RS22000: HSERO_RS22000 - short-chain dehydrogenase, at 5,032,202 to 5,032,969
_RS22000
HSERO_RS22005: HSERO_RS22005 - diguanylate cyclase, at 5,032,987 to 5,033,382
_RS22005
HSERO_RS22010: HSERO_RS22010 - toxin RelE, at 5,033,509 to 5,033,802
_RS22010
HSERO_RS22015: HSERO_RS22015 - DNA-binding protein, at 5,033,820 to 5,034,212
_RS22015
HSERO_RS22020: HSERO_RS22020 - membrane protein, at 5,034,299 to 5,034,904
_RS22020
HSERO_RS22025: HSERO_RS22025 - aromatic amino acid aminotransferase, at 5,034,924 to 5,036,114
_RS22025
Position (kb) 5033
5034
5035 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 5032.828 kb on - strand, within HSERO_RS22000 at 5032.841 kb on + strand at 5032.849 kb on - strand, within HSERO_RS22000 at 5033.466 kb on + strand at 5033.575 kb on - strand, within HSERO_RS22010 at 5033.603 kb on - strand, within HSERO_RS22010 at 5033.693 kb on - strand, within HSERO_RS22010 at 5033.980 kb on + strand, within HSERO_RS22015 at 5034.099 kb on - strand, within HSERO_RS22015 at 5034.151 kb on - strand, within HSERO_RS22015 at 5034.167 kb on + strand, within HSERO_RS22015 at 5034.195 kb on + strand at 5034.236 kb on + strand at 5034.337 kb on - strand at 5034.385 kb on - strand, within HSERO_RS22020 at 5034.460 kb on + strand, within HSERO_RS22020 at 5034.509 kb on + strand, within HSERO_RS22020 at 5034.573 kb on + strand, within HSERO_RS22020 at 5034.578 kb on - strand, within HSERO_RS22020 at 5034.810 kb on + strand, within HSERO_RS22020 at 5035.064 kb on + strand, within HSERO_RS22025
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite 20 mM remove 5,032,828 - HSERO_RS22000 0.82 -0.1 5,032,841 + +1.8 5,032,849 - HSERO_RS22000 0.84 +1.1 5,033,466 + -1.6 5,033,575 - HSERO_RS22010 0.22 +1.0 5,033,603 - HSERO_RS22010 0.32 -0.3 5,033,693 - HSERO_RS22010 0.63 -0.1 5,033,980 + HSERO_RS22015 0.41 +1.8 5,034,099 - HSERO_RS22015 0.71 +0.4 5,034,151 - HSERO_RS22015 0.84 +1.0 5,034,167 + HSERO_RS22015 0.88 +0.2 5,034,195 + +1.1 5,034,236 + -0.3 5,034,337 - +2.2 5,034,385 - HSERO_RS22020 0.14 +1.6 5,034,460 + HSERO_RS22020 0.27 -2.2 5,034,509 + HSERO_RS22020 0.35 +4.3 5,034,573 + HSERO_RS22020 0.45 +1.1 5,034,578 - HSERO_RS22020 0.46 -1.9 5,034,810 + HSERO_RS22020 0.84 -0.0 5,035,064 + HSERO_RS22025 0.12 -1.1
Or see this region's nucleotide sequence