Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS08885

Experiment: nitrite 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS08880 and HSERO_RS08885 are separated by 158 nucleotidesHSERO_RS08885 and HSERO_RS08890 are separated by 12 nucleotidesHSERO_RS08890 and HSERO_RS08895 are separated by 123 nucleotides HSERO_RS08880: HSERO_RS08880 - NADH:ubiquinone oxidoreductase subunit M, at 2,010,003 to 2,011,493 _RS08880 HSERO_RS08885: HSERO_RS08885 - NADH:ubiquinone oxidoreductase subunit N, at 2,011,652 to 2,013,160 _RS08885 HSERO_RS08890: HSERO_RS08890 - membrane protein, at 2,013,173 to 2,013,487 _RS08890 HSERO_RS08895: HSERO_RS08895 - NUDIX hydrolase, at 2,013,611 to 2,014,186 _RS08895 Position (kb) 2011 2012 2013 2014Strain fitness (log2 ratio) -1 0 1at 2013.652 kb on + strandat 2013.685 kb on + strand, within HSERO_RS08895

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrite 20 mM
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2,013,652 + -0.7
2,013,685 + HSERO_RS08895 0.13 -0.2

Or see this region's nucleotide sequence