Experiment: L-Fucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS35765 and BPHYT_RS35770 are separated by 103 nucleotides BPHYT_RS35770 and BPHYT_RS35775 overlap by 4 nucleotides BPHYT_RS35775 and BPHYT_RS35780 are separated by 26 nucleotides
BPHYT_RS35765: BPHYT_RS35765 - ABC transporter permease, at 3,613,220 to 3,615,106
_RS35765
BPHYT_RS35770: BPHYT_RS35770 - glyoxalase, at 3,615,210 to 3,615,749
_RS35770
BPHYT_RS35775: BPHYT_RS35775 - ribulose bisphosphate carboxylase, at 3,615,746 to 3,617,044
_RS35775
BPHYT_RS35780: BPHYT_RS35780 - Hrp-dependent type III effector protein, at 3,617,071 to 3,618,417
_RS35780
Position (kb) 3615
3616
3617
3618 Strain fitness (log2 ratio) -2
-1
0
1 at 3615.375 kb on - strand, within BPHYT_RS35770 at 3615.682 kb on - strand, within BPHYT_RS35770 at 3616.585 kb on - strand, within BPHYT_RS35775 at 3616.793 kb on - strand, within BPHYT_RS35775 at 3616.996 kb on + strand at 3617.367 kb on + strand, within BPHYT_RS35780 at 3617.473 kb on + strand, within BPHYT_RS35780 at 3617.604 kb on - strand, within BPHYT_RS35780 at 3617.840 kb on - strand, within BPHYT_RS35780 at 3617.963 kb on + strand, within BPHYT_RS35780 at 3618.041 kb on - strand, within BPHYT_RS35780
Per-strain Table
Position Strand Gene LocusTag Fraction L-Fucose (C) remove 3,615,375 - BPHYT_RS35770 0.31 +0.6 3,615,682 - BPHYT_RS35770 0.87 -1.9 3,616,585 - BPHYT_RS35775 0.65 -0.8 3,616,793 - BPHYT_RS35775 0.81 -0.9 3,616,996 + -0.2 3,617,367 + BPHYT_RS35780 0.22 +0.2 3,617,473 + BPHYT_RS35780 0.30 -1.1 3,617,604 - BPHYT_RS35780 0.40 -1.3 3,617,840 - BPHYT_RS35780 0.57 -0.9 3,617,963 + BPHYT_RS35780 0.66 +0.2 3,618,041 - BPHYT_RS35780 0.72 -0.1
Or see this region's nucleotide sequence