Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS31785

Experiment: L-Fucose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS31780 and BPHYT_RS31785 are separated by 433 nucleotidesBPHYT_RS31785 and BPHYT_RS31790 are separated by 333 nucleotides BPHYT_RS31780: BPHYT_RS31780 - indoleacetamide hydrolase, at 2,686,893 to 2,688,293 _RS31780 BPHYT_RS31785: BPHYT_RS31785 - hypothetical protein, at 2,688,727 to 2,688,957 _RS31785 BPHYT_RS31790: BPHYT_RS31790 - methyl-accepting chemotaxis sensory transducer, at 2,689,291 to 2,690,835 _RS31790 Position (kb) 2688 2689Strain fitness (log2 ratio) -2 -1 0 1at 2687.914 kb on - strand, within BPHYT_RS31780at 2688.197 kb on - strandat 2688.245 kb on + strandat 2688.337 kb on + strandat 2688.613 kb on + strandat 2688.614 kb on - strandat 2688.728 kb on + strandat 2688.844 kb on + strand, within BPHYT_RS31785at 2689.126 kb on - strandat 2689.642 kb on + strand, within BPHYT_RS31790at 2689.643 kb on - strand, within BPHYT_RS31790at 2689.853 kb on - strand, within BPHYT_RS31790

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
remove
2,687,914 - BPHYT_RS31780 0.73 -1.7
2,688,197 - +0.5
2,688,245 + +1.2
2,688,337 + -0.4
2,688,613 + +0.3
2,688,614 - -0.2
2,688,728 + +0.5
2,688,844 + BPHYT_RS31785 0.51 +0.3
2,689,126 - -1.8
2,689,642 + BPHYT_RS31790 0.23 -0.5
2,689,643 - BPHYT_RS31790 0.23 +0.7
2,689,853 - BPHYT_RS31790 0.36 +0.5

Or see this region's nucleotide sequence