Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS26970

Experiment: L-Fucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS26960 and BPHYT_RS26965 are separated by 73 nucleotidesBPHYT_RS26965 and BPHYT_RS26970 overlap by 14 nucleotidesBPHYT_RS26970 and BPHYT_RS26975 overlap by 4 nucleotidesBPHYT_RS26975 and BPHYT_RS26980 are separated by 237 nucleotides BPHYT_RS26960: BPHYT_RS26960 - LysR family transcriptional regulator, at 1,626,585 to 1,627,469 _RS26960 BPHYT_RS26965: BPHYT_RS26965 - L-lactate dehydrogenase, LldG subunit (from data), at 1,627,543 to 1,628,130 _RS26965 BPHYT_RS26970: BPHYT_RS26970 - L-lactate dehydrogenase, LldF subunit (from data), at 1,628,117 to 1,629,511 _RS26970 BPHYT_RS26975: BPHYT_RS26975 - L-lactate dehydrogenase, LldE subunit (from data), at 1,629,508 to 1,630,251 _RS26975 BPHYT_RS26980: BPHYT_RS26980 - HipA protein, at 1,630,489 to 1,631,808 _RS26980 Position (kb) 1628 1629 1630Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1627.279 kb on + strand, within BPHYT_RS26960at 1627.769 kb on + strand, within BPHYT_RS26965at 1628.212 kb on + strandat 1628.213 kb on - strandat 1628.225 kb on - strandat 1628.286 kb on + strand, within BPHYT_RS26970at 1628.385 kb on + strand, within BPHYT_RS26970at 1628.386 kb on - strand, within BPHYT_RS26970at 1628.467 kb on + strand, within BPHYT_RS26970at 1628.569 kb on + strand, within BPHYT_RS26970at 1628.570 kb on - strandat 1628.706 kb on + strand, within BPHYT_RS26970at 1628.865 kb on - strand, within BPHYT_RS26970at 1629.315 kb on + strand, within BPHYT_RS26970at 1629.624 kb on - strand, within BPHYT_RS26975at 1629.858 kb on + strand, within BPHYT_RS26975at 1630.292 kb on + strandat 1630.293 kb on - strandat 1630.404 kb on + strandat 1630.406 kb on + strandat 1630.500 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
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1,627,279 + BPHYT_RS26960 0.78 +0.4
1,627,769 + BPHYT_RS26965 0.38 -4.7
1,628,212 + -2.8
1,628,213 - -2.5
1,628,225 - -2.5
1,628,286 + BPHYT_RS26970 0.12 -1.8
1,628,385 + BPHYT_RS26970 0.19 -3.3
1,628,386 - BPHYT_RS26970 0.19 -1.9
1,628,467 + BPHYT_RS26970 0.25 -2.1
1,628,569 + BPHYT_RS26970 0.32 -2.4
1,628,570 - -0.8
1,628,706 + BPHYT_RS26970 0.42 -4.0
1,628,865 - BPHYT_RS26970 0.54 -1.5
1,629,315 + BPHYT_RS26970 0.86 -0.8
1,629,624 - BPHYT_RS26975 0.16 +0.2
1,629,858 + BPHYT_RS26975 0.47 -3.6
1,630,292 + -4.1
1,630,293 - -0.1
1,630,404 + -4.0
1,630,406 + -2.4
1,630,500 + +0.0

Or see this region's nucleotide sequence