Experiment: L-Fucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS24735 and BPHYT_RS24740 overlap by 4 nucleotides BPHYT_RS24740 and BPHYT_RS24745 are separated by 148 nucleotides BPHYT_RS24745 and BPHYT_RS24750 are separated by 280 nucleotides BPHYT_RS24750 and BPHYT_RS24755 are separated by 111 nucleotides
BPHYT_RS24735: BPHYT_RS24735 - transcriptional regulator, at 1,115,779 to 1,116,606
_RS24735
BPHYT_RS24740: BPHYT_RS24740 - RNA polymerase subunit sigma-24, at 1,116,603 to 1,117,121
_RS24740
BPHYT_RS24745: BPHYT_RS24745 - transcriptional regulator, at 1,117,270 to 1,117,992
_RS24745
BPHYT_RS24750: BPHYT_RS24750 - hypothetical protein, at 1,118,273 to 1,118,542
_RS24750
BPHYT_RS24755: BPHYT_RS24755 - catalase, at 1,118,654 to 1,119,742
_RS24755
Position (kb)
1117
1118 Strain fitness (log2 ratio)
-2
-1
0
1 at 1116.734 kb on - strand, within BPHYT_RS24740 at 1116.734 kb on - strand, within BPHYT_RS24740 at 1116.802 kb on + strand, within BPHYT_RS24740 at 1117.256 kb on + strand at 1117.257 kb on - strand at 1117.257 kb on - strand at 1117.470 kb on - strand, within BPHYT_RS24745 at 1117.848 kb on - strand, within BPHYT_RS24745 at 1118.051 kb on + strand at 1118.402 kb on + strand, within BPHYT_RS24750 at 1118.440 kb on - strand, within BPHYT_RS24750 at 1118.596 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Fucose (C) remove 1,116,734 - BPHYT_RS24740 0.25 +0.6 1,116,734 - BPHYT_RS24740 0.25 +0.1 1,116,802 + BPHYT_RS24740 0.38 +0.8 1,117,256 + +0.4 1,117,257 - -0.1 1,117,257 - -0.5 1,117,470 - BPHYT_RS24745 0.28 -0.6 1,117,848 - BPHYT_RS24745 0.80 -2.1 1,118,051 + -0.5 1,118,402 + BPHYT_RS24750 0.48 -0.2 1,118,440 - BPHYT_RS24750 0.62 -0.7 1,118,596 - +0.4
Or see this region's nucleotide sequence