Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS21240

Experiment: L-Fucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS21230 and BPHYT_RS21235 are separated by 154 nucleotidesBPHYT_RS21235 and BPHYT_RS21240 overlap by 17 nucleotidesBPHYT_RS21240 and BPHYT_RS21245 are separated by 688 nucleotides BPHYT_RS21230: BPHYT_RS21230 - acyl-homoserine-lactone synthase, at 324,705 to 325,298 _RS21230 BPHYT_RS21235: BPHYT_RS21235 - hypothetical protein, at 325,453 to 325,770 _RS21235 BPHYT_RS21240: BPHYT_RS21240 - LuxR family transcriptional regulator, at 325,754 to 326,458 _RS21240 BPHYT_RS21245: BPHYT_RS21245 - gluconolactonase, at 327,147 to 328,088 _RS21245 Position (kb) 325 326 327Strain fitness (log2 ratio) -3 -2 -1 0 1at 324.878 kb on - strand, within BPHYT_RS21230at 325.135 kb on + strand, within BPHYT_RS21230at 325.136 kb on - strand, within BPHYT_RS21230at 325.136 kb on - strand, within BPHYT_RS21230at 325.191 kb on - strand, within BPHYT_RS21230at 325.234 kb on + strand, within BPHYT_RS21230at 325.235 kb on - strand, within BPHYT_RS21230at 325.235 kb on - strand, within BPHYT_RS21230at 325.235 kb on - strand, within BPHYT_RS21230at 325.235 kb on - strand, within BPHYT_RS21230at 325.235 kb on - strand, within BPHYT_RS21230at 325.370 kb on + strandat 325.370 kb on + strandat 325.370 kb on + strandat 325.371 kb on - strandat 325.371 kb on - strandat 325.371 kb on - strandat 325.371 kb on - strandat 325.375 kb on - strandat 325.375 kb on - strandat 325.383 kb on - strandat 325.383 kb on - strandat 325.549 kb on + strand, within BPHYT_RS21235at 325.675 kb on + strand, within BPHYT_RS21235at 325.768 kb on + strandat 325.769 kb on - strandat 325.769 kb on - strandat 325.947 kb on - strand, within BPHYT_RS21240at 325.947 kb on - strand, within BPHYT_RS21240at 326.003 kb on + strand, within BPHYT_RS21240at 326.048 kb on - strand, within BPHYT_RS21240at 326.048 kb on - strand, within BPHYT_RS21240at 326.172 kb on + strand, within BPHYT_RS21240at 326.173 kb on - strand, within BPHYT_RS21240at 326.286 kb on + strand, within BPHYT_RS21240at 326.286 kb on + strand, within BPHYT_RS21240at 326.287 kb on - strand, within BPHYT_RS21240at 326.290 kb on + strand, within BPHYT_RS21240at 326.290 kb on + strand, within BPHYT_RS21240at 326.290 kb on + strand, within BPHYT_RS21240at 326.310 kb on + strand, within BPHYT_RS21240at 326.310 kb on + strand, within BPHYT_RS21240at 326.310 kb on + strandat 326.310 kb on + strand, within BPHYT_RS21240at 326.314 kb on + strand, within BPHYT_RS21240at 326.314 kb on + strand, within BPHYT_RS21240at 326.314 kb on + strand, within BPHYT_RS21240at 326.315 kb on - strand, within BPHYT_RS21240at 326.325 kb on + strand, within BPHYT_RS21240at 326.326 kb on - strand, within BPHYT_RS21240at 326.326 kb on - strand, within BPHYT_RS21240at 326.326 kb on - strand, within BPHYT_RS21240at 326.563 kb on + strandat 326.563 kb on + strandat 326.569 kb on - strandat 326.700 kb on + strandat 326.700 kb on + strandat 326.753 kb on - strandat 326.768 kb on + strandat 326.853 kb on + strandat 326.874 kb on + strandat 326.900 kb on + strandat 326.994 kb on + strandat 327.246 kb on + strand, within BPHYT_RS21245at 327.247 kb on - strand, within BPHYT_RS21245at 327.304 kb on + strand, within BPHYT_RS21245at 327.304 kb on + strand, within BPHYT_RS21245at 327.402 kb on - strand, within BPHYT_RS21245

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
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324,878 - BPHYT_RS21230 0.29 +1.0
325,135 + BPHYT_RS21230 0.72 -1.4
325,136 - BPHYT_RS21230 0.73 -0.2
325,136 - BPHYT_RS21230 0.73 -1.0
325,191 - BPHYT_RS21230 0.82 -0.5
325,234 + BPHYT_RS21230 0.89 -1.6
325,235 - BPHYT_RS21230 0.89 -0.2
325,235 - BPHYT_RS21230 0.89 -1.9
325,235 - BPHYT_RS21230 0.89 -2.7
325,235 - BPHYT_RS21230 0.89 +0.2
325,235 - BPHYT_RS21230 0.89 -0.5
325,370 + -0.8
325,370 + -2.9
325,370 + +0.4
325,371 - -0.2
325,371 - +0.0
325,371 - +1.3
325,371 - +1.4
325,375 - -2.0
325,375 - +1.7
325,383 - +0.3
325,383 - -0.5
325,549 + BPHYT_RS21235 0.30 -1.7
325,675 + BPHYT_RS21235 0.70 -0.4
325,768 + -2.4
325,769 - +0.2
325,769 - +0.1
325,947 - BPHYT_RS21240 0.27 -0.1
325,947 - BPHYT_RS21240 0.27 -1.3
326,003 + BPHYT_RS21240 0.35 -3.4
326,048 - BPHYT_RS21240 0.42 -2.1
326,048 - BPHYT_RS21240 0.42 -0.5
326,172 + BPHYT_RS21240 0.59 -2.0
326,173 - BPHYT_RS21240 0.59 +1.4
326,286 + BPHYT_RS21240 0.75 -0.6
326,286 + BPHYT_RS21240 0.75 -1.0
326,287 - BPHYT_RS21240 0.76 -0.6
326,290 + BPHYT_RS21240 0.76 -1.4
326,290 + BPHYT_RS21240 0.76 -0.6
326,290 + BPHYT_RS21240 0.76 -0.1
326,310 + BPHYT_RS21240 0.79 -1.2
326,310 + BPHYT_RS21240 0.79 -1.5
326,310 + +0.4
326,310 + BPHYT_RS21240 0.79 -0.6
326,314 + BPHYT_RS21240 0.79 -0.3
326,314 + BPHYT_RS21240 0.79 -0.8
326,314 + BPHYT_RS21240 0.79 +0.3
326,315 - BPHYT_RS21240 0.80 -1.8
326,325 + BPHYT_RS21240 0.81 -1.1
326,326 - BPHYT_RS21240 0.81 -1.1
326,326 - BPHYT_RS21240 0.81 +0.4
326,326 - BPHYT_RS21240 0.81 +0.4
326,563 + +0.1
326,563 + -1.1
326,569 - -2.5
326,700 + +0.5
326,700 + -1.0
326,753 - -1.1
326,768 + -0.2
326,853 + -0.6
326,874 + -0.1
326,900 + -0.9
326,994 + -0.8
327,246 + BPHYT_RS21245 0.11 -0.4
327,247 - BPHYT_RS21245 0.11 +0.0
327,304 + BPHYT_RS21245 0.17 -1.0
327,304 + BPHYT_RS21245 0.17 +1.2
327,402 - BPHYT_RS21245 0.27 -1.0

Or see this region's nucleotide sequence