Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS14930

Experiment: L-Fucose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS14920 and BPHYT_RS14925 are separated by 2 nucleotidesBPHYT_RS14925 and BPHYT_RS14930 are separated by 123 nucleotidesBPHYT_RS14930 and BPHYT_RS14935 are separated by 534 nucleotides BPHYT_RS14920: BPHYT_RS14920 - hypothetical protein, at 3,393,132 to 3,393,425 _RS14920 BPHYT_RS14925: BPHYT_RS14925 - hypothetical protein, at 3,393,428 to 3,394,030 _RS14925 BPHYT_RS14930: BPHYT_RS14930 - DNA gyrase subunit A, at 3,394,154 to 3,396,742 _RS14930 BPHYT_RS14935: BPHYT_RS14935 - membrane protein, at 3,397,277 to 3,397,924 _RS14935 Position (kb) 3394 3395 3396 3397Strain fitness (log2 ratio) -3 -2 -1 0 1at 3393.366 kb on + strand, within BPHYT_RS14920at 3393.366 kb on + strand, within BPHYT_RS14920at 3393.367 kb on - strand, within BPHYT_RS14920at 3393.423 kb on + strandat 3393.430 kb on - strandat 3393.430 kb on - strandat 3394.078 kb on - strandat 3394.082 kb on - strandat 3394.082 kb on - strandat 3394.082 kb on - strandat 3394.123 kb on - strandat 3394.123 kb on - strandat 3396.825 kb on - strandat 3396.825 kb on - strandat 3396.884 kb on - strandat 3396.918 kb on + strandat 3396.918 kb on + strandat 3396.918 kb on + strandat 3396.918 kb on + strandat 3396.924 kb on + strandat 3397.163 kb on + strandat 3397.195 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
remove
3,393,366 + BPHYT_RS14920 0.80 -1.0
3,393,366 + BPHYT_RS14920 0.80 -2.5
3,393,367 - BPHYT_RS14920 0.80 -0.7
3,393,423 + +0.5
3,393,430 - +1.1
3,393,430 - +0.1
3,394,078 - +1.3
3,394,082 - -0.3
3,394,082 - +0.7
3,394,082 - +0.2
3,394,123 - +0.8
3,394,123 - +0.2
3,396,825 - -0.1
3,396,825 - -0.2
3,396,884 - -1.7
3,396,918 + -3.6
3,396,918 + -0.2
3,396,918 + -2.0
3,396,918 + -2.9
3,396,924 + -2.5
3,397,163 + -0.6
3,397,195 + +0.3

Or see this region's nucleotide sequence