Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS14855

Experiment: L-Fucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS14845 and BPHYT_RS14850 are separated by 274 nucleotidesBPHYT_RS14850 and BPHYT_RS14855 are separated by 77 nucleotidesBPHYT_RS14855 and BPHYT_RS14860 are separated by 148 nucleotides BPHYT_RS14845: BPHYT_RS14845 - cysteine synthase, at 3,377,128 to 3,378,030 _RS14845 BPHYT_RS14850: BPHYT_RS14850 - competence protein ComE, at 3,378,305 to 3,378,670 _RS14850 BPHYT_RS14855: BPHYT_RS14855 - ADP-L-glycero-D-manno-heptose-6-epimerase, at 3,378,748 to 3,379,740 _RS14855 BPHYT_RS14860: BPHYT_RS14860 - sugar kinase, at 3,379,889 to 3,380,809 _RS14860 Position (kb) 3378 3379 3380Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3377.759 kb on + strand, within BPHYT_RS14845at 3377.983 kb on + strandat 3377.983 kb on + strandat 3378.030 kb on + strandat 3378.275 kb on + strandat 3378.307 kb on - strandat 3378.670 kb on + strandat 3378.670 kb on + strandat 3378.670 kb on + strandat 3378.686 kb on + strandat 3378.764 kb on - strandat 3379.212 kb on + strand, within BPHYT_RS14855at 3379.232 kb on + strand, within BPHYT_RS14855at 3379.590 kb on - strand, within BPHYT_RS14855

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
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3,377,759 + BPHYT_RS14845 0.70 -3.0
3,377,983 + -1.5
3,377,983 + -3.1
3,378,030 + -2.8
3,378,275 + +0.8
3,378,307 - -0.3
3,378,670 + -1.5
3,378,670 + +0.1
3,378,670 + +0.2
3,378,686 + +0.0
3,378,764 - +0.1
3,379,212 + BPHYT_RS14855 0.47 -4.0
3,379,232 + BPHYT_RS14855 0.49 -2.3
3,379,590 - BPHYT_RS14855 0.85 -2.4

Or see this region's nucleotide sequence