Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS05230

Experiment: L-Fucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS05225 and BPHYT_RS05230 are separated by 403 nucleotidesBPHYT_RS05230 and BPHYT_RS05235 overlap by 1 nucleotides BPHYT_RS05225: BPHYT_RS05225 - phosphoenolpyruvate carboxylase, at 1,202,929 to 1,206,156 _RS05225 BPHYT_RS05230: BPHYT_RS05230 - porphobilinogen deaminase, at 1,206,560 to 1,207,588 _RS05230 BPHYT_RS05235: BPHYT_RS05235 - bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase, at 1,207,588 to 1,209,606 _RS05235 Position (kb) 1206 1207 1208Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1205.901 kb on + strandat 1206.354 kb on + strandat 1206.529 kb on + strandat 1206.532 kb on + strandat 1206.532 kb on + strandat 1206.532 kb on + strandat 1206.558 kb on + strandat 1208.481 kb on + strand, within BPHYT_RS05235

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
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1,205,901 + -5.1
1,206,354 + -4.9
1,206,529 + -2.2
1,206,532 + -0.1
1,206,532 + -2.5
1,206,532 + -3.4
1,206,558 + -1.5
1,208,481 + BPHYT_RS05235 0.44 +0.3

Or see this region's nucleotide sequence