Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS04870

Experiment: L-Fucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS04865 and BPHYT_RS04870 are separated by 42 nucleotidesBPHYT_RS04870 and BPHYT_RS04875 overlap by 16 nucleotidesBPHYT_RS04875 and BPHYT_RS04880 are separated by 29 nucleotides BPHYT_RS04865: BPHYT_RS04865 - nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase, at 1,120,455 to 1,121,516 _RS04865 BPHYT_RS04870: BPHYT_RS04870 - cobalamin synthase, at 1,121,559 to 1,122,335 _RS04870 BPHYT_RS04875: BPHYT_RS04875 - alpha-ribazole phosphatase, at 1,122,320 to 1,122,910 _RS04875 BPHYT_RS04880: BPHYT_RS04880 - cobalamin-binding protein, at 1,122,940 to 1,123,842 _RS04880 Position (kb) 1121 1122 1123Strain fitness (log2 ratio) -2 -1 0 1at 1121.208 kb on + strand, within BPHYT_RS04865at 1121.209 kb on - strand, within BPHYT_RS04865at 1121.310 kb on + strand, within BPHYT_RS04865at 1121.311 kb on - strand, within BPHYT_RS04865at 1121.652 kb on + strand, within BPHYT_RS04870at 1121.692 kb on + strand, within BPHYT_RS04870at 1121.721 kb on + strand, within BPHYT_RS04870at 1121.722 kb on - strand, within BPHYT_RS04870at 1121.850 kb on + strand, within BPHYT_RS04870at 1121.850 kb on + strand, within BPHYT_RS04870at 1122.027 kb on + strand, within BPHYT_RS04870at 1122.028 kb on - strand, within BPHYT_RS04870at 1122.035 kb on + strand, within BPHYT_RS04870at 1122.206 kb on - strand, within BPHYT_RS04870at 1122.229 kb on - strand, within BPHYT_RS04870at 1122.252 kb on + strand, within BPHYT_RS04870at 1122.624 kb on + strand, within BPHYT_RS04875at 1122.749 kb on + strand, within BPHYT_RS04875at 1122.750 kb on - strand, within BPHYT_RS04875at 1122.922 kb on + strandat 1122.922 kb on + strandat 1122.922 kb on + strandat 1122.923 kb on - strandat 1122.923 kb on - strandat 1122.928 kb on - strandat 1122.928 kb on - strandat 1123.316 kb on + strand, within BPHYT_RS04880

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
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1,121,208 + BPHYT_RS04865 0.71 -1.9
1,121,209 - BPHYT_RS04865 0.71 -1.7
1,121,310 + BPHYT_RS04865 0.81 +1.1
1,121,311 - BPHYT_RS04865 0.81 -0.6
1,121,652 + BPHYT_RS04870 0.12 -0.4
1,121,692 + BPHYT_RS04870 0.17 -0.5
1,121,721 + BPHYT_RS04870 0.21 -0.4
1,121,722 - BPHYT_RS04870 0.21 -1.5
1,121,850 + BPHYT_RS04870 0.37 -0.6
1,121,850 + BPHYT_RS04870 0.37 -1.4
1,122,027 + BPHYT_RS04870 0.60 -0.2
1,122,028 - BPHYT_RS04870 0.60 +1.0
1,122,035 + BPHYT_RS04870 0.61 -0.5
1,122,206 - BPHYT_RS04870 0.83 -0.8
1,122,229 - BPHYT_RS04870 0.86 +0.6
1,122,252 + BPHYT_RS04870 0.89 -0.9
1,122,624 + BPHYT_RS04875 0.51 -1.0
1,122,749 + BPHYT_RS04875 0.73 +1.6
1,122,750 - BPHYT_RS04875 0.73 +0.0
1,122,922 + -1.4
1,122,922 + +0.1
1,122,922 + -0.3
1,122,923 - -0.7
1,122,923 - +0.4
1,122,928 - -0.5
1,122,928 - +0.8
1,123,316 + BPHYT_RS04880 0.42 -2.0

Or see this region's nucleotide sequence