Experiment: L-Fucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01385 and BPHYT_RS01390 are separated by 383 nucleotides BPHYT_RS01390 and BPHYT_RS01395 are separated by 281 nucleotides
BPHYT_RS01385: BPHYT_RS01385 - cation ABC transporter permease, at 316,389 to 317,201
_RS01385
BPHYT_RS01390: BPHYT_RS01390 - hypothetical protein, at 317,585 to 317,776
_RS01390
BPHYT_RS01395: BPHYT_RS01395 - tRNA-Arg, at 318,058 to 318,147
_RS01395
Position (kb) 317
318 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 316.655 kb on + strand, within BPHYT_RS01385 at 316.655 kb on + strand, within BPHYT_RS01385 at 316.719 kb on + strand, within BPHYT_RS01385 at 316.720 kb on - strand, within BPHYT_RS01385 at 316.741 kb on + strand, within BPHYT_RS01385 at 316.742 kb on - strand, within BPHYT_RS01385 at 316.742 kb on - strand, within BPHYT_RS01385 at 316.942 kb on + strand, within BPHYT_RS01385 at 316.943 kb on - strand, within BPHYT_RS01385 at 317.082 kb on + strand, within BPHYT_RS01385 at 317.082 kb on + strand, within BPHYT_RS01385 at 317.082 kb on + strand, within BPHYT_RS01385 at 317.082 kb on + strand, within BPHYT_RS01385 at 317.083 kb on - strand, within BPHYT_RS01385 at 317.083 kb on - strand, within BPHYT_RS01385 at 317.083 kb on - strand, within BPHYT_RS01385 at 317.083 kb on - strand, within BPHYT_RS01385 at 317.134 kb on + strand at 317.134 kb on + strand at 317.134 kb on + strand at 317.134 kb on + strand at 317.135 kb on - strand at 317.135 kb on - strand at 317.136 kb on + strand at 317.136 kb on + strand at 317.136 kb on + strand at 317.137 kb on - strand at 317.199 kb on + strand at 317.200 kb on - strand at 317.267 kb on + strand at 317.334 kb on + strand at 317.334 kb on + strand at 317.334 kb on + strand at 317.335 kb on - strand at 317.335 kb on - strand at 317.337 kb on + strand at 317.337 kb on - strand at 317.338 kb on - strand at 317.411 kb on + strand at 317.411 kb on + strand at 317.411 kb on + strand at 317.411 kb on + strand at 317.411 kb on + strand at 317.411 kb on + strand at 317.412 kb on - strand at 317.413 kb on + strand at 317.413 kb on + strand at 317.413 kb on + strand at 317.413 kb on + strand at 317.414 kb on - strand at 317.414 kb on - strand at 317.414 kb on - strand at 317.414 kb on - strand at 317.537 kb on - strand at 317.571 kb on + strand at 317.571 kb on + strand at 317.572 kb on - strand at 317.572 kb on - strand at 317.572 kb on - strand at 317.572 kb on - strand at 317.572 kb on - strand at 317.664 kb on - strand, within BPHYT_RS01390 at 317.764 kb on + strand at 317.765 kb on - strand at 317.903 kb on - strand at 317.903 kb on - strand at 317.960 kb on - strand at 317.982 kb on - strand at 317.982 kb on - strand at 317.982 kb on - strand at 317.982 kb on - strand at 318.004 kb on - strand at 318.103 kb on - strand, within BPHYT_RS01395 at 318.127 kb on - strand, within BPHYT_RS01395 at 318.127 kb on - strand, within BPHYT_RS01395 at 318.127 kb on - strand, within BPHYT_RS01395 at 318.218 kb on - strand at 318.325 kb on - strand at 318.339 kb on - strand at 318.339 kb on - strand at 318.341 kb on - strand at 318.445 kb on - strand at 318.494 kb on + strand at 318.494 kb on + strand at 318.549 kb on + strand at 318.550 kb on - strand at 318.692 kb on + strand at 318.693 kb on - strand at 318.693 kb on - strand at 318.738 kb on + strand at 318.738 kb on + strand at 318.739 kb on - strand at 318.739 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Fucose (C) remove 316,655 + BPHYT_RS01385 0.33 -0.2 316,655 + BPHYT_RS01385 0.33 +0.6 316,719 + BPHYT_RS01385 0.41 +1.3 316,720 - BPHYT_RS01385 0.41 -0.2 316,741 + BPHYT_RS01385 0.43 +1.4 316,742 - BPHYT_RS01385 0.43 -1.0 316,742 - BPHYT_RS01385 0.43 -0.4 316,942 + BPHYT_RS01385 0.68 -1.3 316,943 - BPHYT_RS01385 0.68 -1.2 317,082 + BPHYT_RS01385 0.85 +0.5 317,082 + BPHYT_RS01385 0.85 -0.7 317,082 + BPHYT_RS01385 0.85 +0.4 317,082 + BPHYT_RS01385 0.85 -1.6 317,083 - BPHYT_RS01385 0.85 -0.1 317,083 - BPHYT_RS01385 0.85 -1.5 317,083 - BPHYT_RS01385 0.85 +1.0 317,083 - BPHYT_RS01385 0.85 -0.2 317,134 + -0.6 317,134 + -0.3 317,134 + +1.7 317,134 + -0.9 317,135 - +1.6 317,135 - -2.4 317,136 + +0.6 317,136 + +1.1 317,136 + -1.4 317,137 - +0.2 317,199 + -2.9 317,200 - +0.1 317,267 + +0.1 317,334 + +0.4 317,334 + +0.3 317,334 + +0.7 317,335 - -0.1 317,335 - +0.3 317,337 + +1.5 317,337 - -1.8 317,338 - -1.4 317,411 + +0.8 317,411 + -0.1 317,411 + -0.1 317,411 + +0.5 317,411 + -0.6 317,411 + +0.0 317,412 - -0.9 317,413 + -0.4 317,413 + +0.2 317,413 + -1.8 317,413 + -0.2 317,414 - +0.4 317,414 - -0.0 317,414 - -0.5 317,414 - -2.5 317,537 - -0.5 317,571 + -1.0 317,571 + +0.6 317,572 - +0.3 317,572 - -0.7 317,572 - -0.5 317,572 - -0.2 317,572 - -0.1 317,664 - BPHYT_RS01390 0.41 -2.2 317,764 + -2.5 317,765 - +0.7 317,903 - +0.1 317,903 - -0.5 317,960 - -2.3 317,982 - +0.5 317,982 - +0.3 317,982 - -0.4 317,982 - -0.6 318,004 - -0.1 318,103 - BPHYT_RS01395 0.50 -0.2 318,127 - BPHYT_RS01395 0.77 +0.5 318,127 - BPHYT_RS01395 0.77 +0.1 318,127 - BPHYT_RS01395 0.77 +2.0 318,218 - +0.2 318,325 - +0.9 318,339 - +0.9 318,339 - -0.0 318,341 - +0.7 318,445 - -0.3 318,494 + +1.2 318,494 + -0.0 318,549 + -0.3 318,550 - -0.3 318,692 + -0.3 318,693 - +0.3 318,693 - -0.2 318,738 + -0.4 318,738 + +0.2 318,739 - -0.4 318,739 - +0.1
Or see this region's nucleotide sequence