Experiment: L-Fucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00200 and BPHYT_RS00205 are separated by 185 nucleotides BPHYT_RS00205 and BPHYT_RS00210 overlap by 23 nucleotides BPHYT_RS00210 and BPHYT_RS00215 are separated by 10 nucleotides BPHYT_RS00215 and BPHYT_RS00220 are separated by 5 nucleotides
BPHYT_RS00200: BPHYT_RS00200 - amidase, at 53,149 to 54,552
_RS00200
BPHYT_RS00205: BPHYT_RS00205 - DeoR family transcriptional regulator, at 54,738 to 55,496
_RS00205
BPHYT_RS00210: BPHYT_RS00210 - allantoate amidohydrolase, at 55,474 to 56,766
_RS00210
BPHYT_RS00215: BPHYT_RS00215 - aminoglycoside phosphotransferase, at 56,777 to 57,727
_RS00215
BPHYT_RS00220: BPHYT_RS00220 - choline kinase, at 57,733 to 58,674
_RS00220
Position (kb) 55
56
57 Strain fitness (log2 ratio) -2
-1
0
1
2 at 54.566 kb on - strand at 54.566 kb on - strand at 54.566 kb on - strand at 54.671 kb on + strand at 54.708 kb on - strand at 54.715 kb on + strand at 54.756 kb on - strand at 55.202 kb on + strand, within BPHYT_RS00205 at 55.231 kb on - strand, within BPHYT_RS00205 at 55.450 kb on - strand at 55.460 kb on + strand at 55.483 kb on + strand at 55.483 kb on + strand at 55.484 kb on - strand at 55.484 kb on - strand at 55.484 kb on - strand at 55.494 kb on + strand at 55.634 kb on + strand, within BPHYT_RS00210 at 55.739 kb on - strand, within BPHYT_RS00210 at 55.764 kb on + strand, within BPHYT_RS00210 at 55.765 kb on - strand, within BPHYT_RS00210 at 56.075 kb on - strand, within BPHYT_RS00210 at 56.136 kb on - strand, within BPHYT_RS00210 at 56.136 kb on - strand, within BPHYT_RS00210 at 56.267 kb on - strand, within BPHYT_RS00210 at 56.368 kb on + strand, within BPHYT_RS00210 at 56.369 kb on - strand, within BPHYT_RS00210 at 56.489 kb on + strand, within BPHYT_RS00210 at 56.606 kb on + strand, within BPHYT_RS00210 at 56.607 kb on - strand, within BPHYT_RS00210 at 56.639 kb on + strand at 56.664 kb on + strand at 56.849 kb on - strand at 56.958 kb on - strand, within BPHYT_RS00215 at 57.044 kb on + strand, within BPHYT_RS00215 at 57.045 kb on - strand, within BPHYT_RS00215 at 57.543 kb on - strand, within BPHYT_RS00215 at 57.601 kb on - strand, within BPHYT_RS00215 at 57.601 kb on - strand, within BPHYT_RS00215 at 57.660 kb on + strand at 57.725 kb on + strand at 57.725 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Fucose (C) remove 54,566 - +0.4 54,566 - +0.5 54,566 - +0.1 54,671 + -0.5 54,708 - +0.2 54,715 + +0.9 54,756 - -0.8 55,202 + BPHYT_RS00205 0.61 -0.5 55,231 - BPHYT_RS00205 0.65 -1.3 55,450 - +0.6 55,460 + -1.1 55,483 + +1.0 55,483 + +1.0 55,484 - +0.9 55,484 - -2.6 55,484 - +2.6 55,494 + +0.5 55,634 + BPHYT_RS00210 0.12 -0.7 55,739 - BPHYT_RS00210 0.20 +0.0 55,764 + BPHYT_RS00210 0.22 +0.3 55,765 - BPHYT_RS00210 0.23 -0.0 56,075 - BPHYT_RS00210 0.46 -0.9 56,136 - BPHYT_RS00210 0.51 -0.8 56,136 - BPHYT_RS00210 0.51 -2.2 56,267 - BPHYT_RS00210 0.61 -0.6 56,368 + BPHYT_RS00210 0.69 -1.3 56,369 - BPHYT_RS00210 0.69 -0.8 56,489 + BPHYT_RS00210 0.78 -0.3 56,606 + BPHYT_RS00210 0.88 +0.4 56,607 - BPHYT_RS00210 0.88 -0.7 56,639 + -1.1 56,664 + +0.2 56,849 - -1.2 56,958 - BPHYT_RS00215 0.19 +0.9 57,044 + BPHYT_RS00215 0.28 -1.8 57,045 - BPHYT_RS00215 0.28 +1.4 57,543 - BPHYT_RS00215 0.81 -0.4 57,601 - BPHYT_RS00215 0.87 -1.9 57,601 - BPHYT_RS00215 0.87 -0.3 57,660 + +0.2 57,725 + -0.8 57,725 + -0.1
Or see this region's nucleotide sequence