Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS18965

Experiment: CDM1 without Aspartate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	CDM1 without Aspartate
2,031,407	+		BBR_RS18960	0.17	+0.2
2,031,407	+		BBR_RS18960	0.17	+0.1
2,031,415	-		BBR_RS18960	0.18	-0.8
2,031,415	-		BBR_RS18960	0.18	-0.5
2,031,421	+		BBR_RS18960	0.19	-0.3
2,031,421	+		BBR_RS18960	0.19	-1.0
2,031,421	+		BBR_RS18960	0.19	-1.0
2,031,426	+		BBR_RS18960	0.19	-0.4
2,031,429	-		BBR_RS18960	0.19	+0.2
2,031,429	-		BBR_RS18960	0.19	-1.1
2,031,434	-		BBR_RS18960	0.20	-0.3
2,031,444	+		BBR_RS18960	0.21	+0.4
2,031,446	-		BBR_RS18960	0.21	-1.8
2,031,454	+		BBR_RS18960	0.22	-0.4
2,031,465	-		BBR_RS18960	0.23	-0.0
2,031,473	-		BBR_RS18960	0.23	-0.2
2,031,489	-		BBR_RS18960	0.25	-1.0
2,031,504	-		BBR_RS18960	0.26	-0.7
2,031,504	-		BBR_RS18960	0.26	+1.0
2,031,520	+		BBR_RS18960	0.27	-0.7
2,031,527	+		BBR_RS18960	0.28	-1.0
2,031,532	+		BBR_RS18960	0.28	-0.4
2,031,532	+		BBR_RS18960	0.28	-0.7
2,031,540	-		BBR_RS18960	0.29	-0.3
2,031,544	+		BBR_RS18960	0.30	+0.2
2,031,550	+		BBR_RS18960	0.30	+0.1
2,031,558	-		BBR_RS18960	0.31	+0.2
2,031,560	-		BBR_RS18960	0.31	-1.7
2,031,613	-		BBR_RS18960	0.36	-0.2
2,031,641	+		BBR_RS18960	0.38	+0.5
2,031,641	+		BBR_RS18960	0.38	-0.1
2,031,657	+		BBR_RS18960	0.40	-0.4
2,031,659	+		BBR_RS18960	0.40	-1.1
2,031,661	-		BBR_RS18960	0.40	+1.2
2,031,663	-		BBR_RS18960	0.40	+1.1
2,031,696	-		BBR_RS18960	0.43	-0.8
2,031,702	-		BBR_RS18960	0.43	+0.2
2,031,702	-		BBR_RS18960	0.43	-0.2
2,031,731	+		BBR_RS18960	0.46	+0.4
2,031,739	+		BBR_RS18960	0.47	+2.1
2,031,742	-		BBR_RS18960	0.47	-0.5
2,031,769	+		BBR_RS18960	0.49	+0.8
2,031,771	+		BBR_RS18960	0.50	+0.5
2,031,798	+		BBR_RS18960	0.52	+0.2
2,031,808	+		BBR_RS18960	0.53	-0.4
2,031,882	+		BBR_RS18960	0.59	-1.0
2,031,882	+		BBR_RS18960	0.59	+0.5
2,031,885	-		BBR_RS18960	0.60	-0.3
2,031,889	-		BBR_RS18960	0.60	+0.5
2,031,890	-		BBR_RS18960	0.60	-1.0
2,031,890	-		BBR_RS18960	0.60	-0.2
2,031,910	+		BBR_RS18960	0.62	+0.1
2,031,913	+		BBR_RS18960	0.62	-0.5
2,031,918	+		BBR_RS18960	0.63	+0.2
2,031,926	-		BBR_RS18960	0.63	+0.0
2,031,948	-		BBR_RS18960	0.65	+0.1
2,031,953	+		BBR_RS18960	0.66	-1.6
2,031,970	+		BBR_RS18960	0.67	-0.2
2,031,970	+		BBR_RS18960	0.67	+0.2
2,031,976	-		BBR_RS18960	0.68	-1.3
2,031,981	-		BBR_RS18960	0.68	+1.1
2,031,982	+		BBR_RS18960	0.68	+0.3
2,032,000	+		BBR_RS18960	0.70	-0.2
2,032,009	-		BBR_RS18960	0.71	+0.1
2,032,009	-		BBR_RS18960	0.71	-2.7
2,032,009	-		BBR_RS18960	0.71	-0.1
2,032,023	+		BBR_RS18960	0.72	-0.1
2,032,023	+		BBR_RS18960	0.72	+0.7
2,032,031	-		BBR_RS18960	0.72	+0.1
2,032,032	+		BBR_RS18960	0.73	+0.1
2,032,032	+		BBR_RS18960	0.73	+0.1
2,032,063	-		BBR_RS18960	0.75	-0.6
2,032,064	+		BBR_RS18960	0.75	-1.8
2,032,084	-		BBR_RS18960	0.77	-0.0
2,032,084	-		BBR_RS18960	0.77	+0.8
2,032,089	-		BBR_RS18960	0.78	-0.7
2,032,089	-		BBR_RS18960	0.78	-1.6
2,032,091	+		BBR_RS18960	0.78	+0.8
2,032,125	+		BBR_RS18960	0.81	-0.5
2,032,154	+		BBR_RS18960	0.83	-0.2
2,032,161	+		BBR_RS18960	0.84	-0.9
2,032,163	+		BBR_RS18960	0.84	+0.9
2,032,169	-		BBR_RS18960	0.85	+0.5
2,032,169	-		BBR_RS18960	0.85	-0.8
2,032,169	-		BBR_RS18960	0.85	-0.5
2,032,171	-		BBR_RS18960	0.85	-0.2
2,032,171	-		BBR_RS18960	0.85	+0.6
2,032,216	+		BBR_RS18960	0.89	-0.8
2,032,224	-		BBR_RS18960	0.90	-0.2
2,032,229	-				-0.2
2,032,254	-				+0.6
2,032,257	+				+0.6
2,032,257	-				-0.0
2,032,257	-				-0.6
2,032,323	-				-0.2
2,032,408	+				+0.6
2,032,442	-				+0.3
2,032,447	-				+0.5
2,032,447	-				+0.3
2,032,467	-				-0.5
2,032,491	+				+0.0
2,032,494	-				-0.5
2,032,496	+				-0.2
2,032,502	+				+0.3
2,032,509	-				+0.5
2,032,524	+				+0.5
2,032,529	+				+0.7
2,032,529	+				-0.4
2,032,534	+				+0.1
2,032,534	+				-1.4
2,032,534	+				+0.6
2,032,537	-				-2.2
2,032,557	+				-0.8
2,032,587	+				+0.1
2,032,629	+				+0.5
2,032,629	+				+0.3
2,032,637	-				+1.1
2,032,648	-				+0.2
2,032,655	+		BBR_RS18965	0.10	+0.0
2,032,655	+		BBR_RS18965	0.10	-0.5
2,032,655	+		BBR_RS18965	0.10	-0.3
2,032,671	-		BBR_RS18965	0.11	-1.2
2,032,680	+		BBR_RS18965	0.11	-0.7
2,032,685	+		BBR_RS18965	0.11	-0.1
2,032,688	-		BBR_RS18965	0.11	+0.7
2,032,693	-		BBR_RS18965	0.12	+1.2
2,032,695	+		BBR_RS18965	0.12	+1.1
2,032,703	-		BBR_RS18965	0.12	-0.7
2,032,705	+		BBR_RS18965	0.12	+0.4
2,032,705	+		BBR_RS18965	0.12	+0.4
2,032,705	+		BBR_RS18965	0.12	+0.4
2,032,708	-		BBR_RS18965	0.12	+1.9
2,032,713	-		BBR_RS18965	0.12	-0.4
2,032,713	-		BBR_RS18965	0.12	+0.2
2,032,713	-		BBR_RS18965	0.12	+0.3
2,032,713	-		BBR_RS18965	0.12	+0.4
2,032,713	-		BBR_RS18965	0.12	-0.2
2,032,757	-		BBR_RS18965	0.14	-0.0
2,032,757	-		BBR_RS18965	0.14	+0.4
2,032,758	+		BBR_RS18965	0.14	-0.6
2,032,784	-		BBR_RS18965	0.15	-0.6
2,032,794	-		BBR_RS18965	0.16	-0.2
2,032,817	+		BBR_RS18965	0.17	-1.2
2,032,818	-		BBR_RS18965	0.17	-0.1
2,032,825	-		BBR_RS18965	0.17	+0.6
2,032,835	+		BBR_RS18965	0.17	-0.4
2,032,838	-		BBR_RS18965	0.17	-0.1
2,032,840	+		BBR_RS18965	0.17	+0.4
2,032,840	+		BBR_RS18965	0.17	-1.3
2,032,885	+		BBR_RS18965	0.19	+0.9
2,032,885	+		BBR_RS18965	0.19	-0.1
2,032,885	+		BBR_RS18965	0.19	+0.2
2,032,886	+		BBR_RS18965	0.19	+0.3
2,032,893	-		BBR_RS18965	0.20	+0.3
2,032,893	-		BBR_RS18965	0.20	-0.4
2,032,893	-		BBR_RS18965	0.20	+0.1
2,032,896	-		BBR_RS18965	0.20	-0.5
2,032,907	+		BBR_RS18965	0.20	+0.7
2,032,915	-		BBR_RS18965	0.20	+0.3
2,032,917	-		BBR_RS18965	0.21	+0.0
2,032,925	-		BBR_RS18965	0.21	+1.6
2,032,970	+		BBR_RS18965	0.23	-0.6
2,032,978	+		BBR_RS18965	0.23	-0.0
2,032,978	-		BBR_RS18965	0.23	-0.7
2,032,991	-		BBR_RS18965	0.23	-0.2
2,032,998	+		BBR_RS18965	0.24	+0.1
2,033,004	-		BBR_RS18965	0.24	+0.6
2,033,004	-		BBR_RS18965	0.24	-0.4
2,033,006	-		BBR_RS18965	0.24	+0.7
2,033,006	-		BBR_RS18965	0.24	-0.8
2,033,006	-		BBR_RS18965	0.24	+1.1
2,033,007	-		BBR_RS18965	0.24	+0.2
2,033,055	-		BBR_RS18965	0.26	+0.1
2,033,058	+		BBR_RS18965	0.26	-0.3
2,033,064	+		BBR_RS18965	0.26	-0.4
2,033,064	+		BBR_RS18965	0.26	+1.0
2,033,066	+		BBR_RS18965	0.26	-0.0
2,033,066	+		BBR_RS18965	0.26	+0.2
2,033,072	-		BBR_RS18965	0.27	+0.0
2,033,081	+		BBR_RS18965	0.27	-0.9
2,033,082	-		BBR_RS18965	0.27	+0.1
2,033,086	+		BBR_RS18965	0.27	-0.1
2,033,089	-		BBR_RS18965	0.27	+0.7
2,033,089	-		BBR_RS18965	0.27	+0.6
2,033,089	-		BBR_RS18965	0.27	-1.3
2,033,089	-		BBR_RS18965	0.27	+1.0
2,033,110	-		BBR_RS18965	0.28	-1.4
2,033,146	-		BBR_RS18965	0.30	-0.0
2,033,146	-		BBR_RS18965	0.30	+0.9
2,033,154	+		BBR_RS18965	0.30	+0.6
2,033,157	-		BBR_RS18965	0.30	+0.1
2,033,157	-		BBR_RS18965	0.30	-0.8
2,033,162	-		BBR_RS18965	0.30	+0.3
2,033,185	-		BBR_RS18965	0.31	+0.0
2,033,204	+		BBR_RS18965	0.32	-0.9
2,033,227	-		BBR_RS18965	0.33	+0.7
2,033,232	+		BBR_RS18965	0.33	-0.1
2,033,232	+		BBR_RS18965	0.33	+0.6
2,033,242	+		BBR_RS18965	0.33	-0.2
2,033,245	-		BBR_RS18965	0.34	+0.4
2,033,247	+		BBR_RS18965	0.34	+1.3
2,033,263	+		BBR_RS18965	0.34	-0.6
2,033,280	-		BBR_RS18965	0.35	+0.4
2,033,280	-		BBR_RS18965	0.35	+0.8
2,033,287	+		BBR_RS18965	0.35	+0.3
2,033,295	-		BBR_RS18965	0.36	+0.6
2,033,317	+		BBR_RS18965	0.36	+0.2
2,033,318	+		BBR_RS18965	0.36	+0.6
2,033,334	-		BBR_RS18965	0.37	-1.7
2,033,341	+		BBR_RS18965	0.37	+0.1
2,033,341	+		BBR_RS18965	0.37	+1.2
2,033,349	-		BBR_RS18965	0.38	-0.1
2,033,385	-		BBR_RS18965	0.39	+0.3
2,033,421	-		BBR_RS18965	0.41	-0.3
2,033,430	+		BBR_RS18965	0.41	-0.1
2,033,464	+		BBR_RS18965	0.42	-1.2
2,033,480	+		BBR_RS18965	0.43	+0.7
2,033,516	-		BBR_RS18965	0.44	-1.2
2,033,534	-		BBR_RS18965	0.45	-0.2
2,033,568	-		BBR_RS18965	0.46	+0.6
2,033,595	+		BBR_RS18965	0.47	+0.3
2,033,617	+		BBR_RS18965	0.48	-2.3
2,033,654	+		BBR_RS18965	0.50	+0.2
2,033,656	+		BBR_RS18965	0.50	+1.1
2,033,656	+		BBR_RS18965	0.50	+0.2
2,033,658	+		BBR_RS18965	0.50	-1.0
2,033,664	-		BBR_RS18965	0.50	+0.8
2,033,664	-		BBR_RS18965	0.50	+0.2
2,033,691	+		BBR_RS18965	0.51	+1.6
2,033,692	+		BBR_RS18965	0.51	+1.4
2,033,707	-		BBR_RS18965	0.52	+0.8
2,033,710	+		BBR_RS18965	0.52	-1.1
2,033,712	+		BBR_RS18965	0.52	+0.5
2,033,717	+		BBR_RS18965	0.52	-0.2
2,033,717	+		BBR_RS18965	0.52	+0.4
2,033,720	-		BBR_RS18965	0.52	+0.0
2,033,744	+		BBR_RS18965	0.53	-0.4
2,033,744	+		BBR_RS18965	0.53	+0.2
2,033,744	+		BBR_RS18965	0.53	+0.5
2,033,744	+		BBR_RS18965	0.53	+0.8
2,033,756	+		BBR_RS18965	0.54	+1.7
2,033,756	+		BBR_RS18965	0.54	+0.2
2,033,756	+		BBR_RS18965	0.54	-0.2
2,033,766	-		BBR_RS18965	0.54	+0.5
2,033,793	-		BBR_RS18965	0.55	+0.8
2,033,816	+		BBR_RS18965	0.56	+0.1
2,033,816	-		BBR_RS18965	0.56	-0.1
2,033,818	+		BBR_RS18965	0.56	-0.4
2,033,824	-		BBR_RS18965	0.57	-0.5
2,033,834	+		BBR_RS18965	0.57	-0.1
2,033,834	+		BBR_RS18965	0.57	+0.6
2,033,837	-		BBR_RS18965	0.57	+0.5
2,033,837	-		BBR_RS18965	0.57	+0.5
2,033,837	-		BBR_RS18965	0.57	+0.9
2,033,837	-		BBR_RS18965	0.57	+0.2
2,033,837	-		BBR_RS18965	0.57	-0.2
2,033,842	-		BBR_RS18965	0.57	-0.1
2,033,842	-		BBR_RS18965	0.57	+0.4
2,033,863	+		BBR_RS18965	0.58	+0.1
2,033,880	-		BBR_RS18965	0.59	-0.2
2,033,880	-		BBR_RS18965	0.59	+1.1
2,033,883	+		BBR_RS18965	0.59	-0.0
2,033,933	-		BBR_RS18965	0.61	+0.3
2,033,935	-		BBR_RS18965	0.61	+0.5
2,033,946	+		BBR_RS18965	0.61	+0.3
2,033,954	-		BBR_RS18965	0.62	+0.6
2,033,955	+		BBR_RS18965	0.62	-0.6
2,033,955	+		BBR_RS18965	0.62	-0.5
2,033,963	-		BBR_RS18965	0.62	+0.2
2,033,963	-		BBR_RS18965	0.62	+0.3
2,033,963	-		BBR_RS18965	0.62	+0.6
2,033,969	+		BBR_RS18965	0.62	-0.9
2,033,969	+		BBR_RS18965	0.62	-1.2
2,033,977	+		BBR_RS18965	0.63	-0.1
2,033,977	-		BBR_RS18965	0.63	+0.5
2,033,999	-		BBR_RS18965	0.64	+0.3
2,034,001	+		BBR_RS18965	0.64	-0.7
2,034,001	+		BBR_RS18965	0.64	-0.1
2,034,003	-		BBR_RS18965	0.64	-0.3
2,034,009	-		BBR_RS18965	0.64	+0.3
2,034,016	-		BBR_RS18965	0.64	+1.3
2,034,016	-		BBR_RS18965	0.64	+0.7
2,034,025	+		BBR_RS18965	0.65	+0.3
2,034,035	-		BBR_RS18965	0.65	-0.1
2,034,037	+		BBR_RS18965	0.65	+0.2
2,034,073	-		BBR_RS18965	0.66	-0.4
2,034,080	+		BBR_RS18965	0.67	-0.0
2,034,080	+		BBR_RS18965	0.67	-1.3
2,034,088	-		BBR_RS18965	0.67	+0.4
2,034,093	-		BBR_RS18965	0.67	-0.7
2,034,104	-		BBR_RS18965	0.68	-0.3
2,034,104	-		BBR_RS18965	0.68	+0.5
2,034,158	+		BBR_RS18965	0.70	+1.2
2,034,183	+		BBR_RS18965	0.71	+0.1
2,034,199	+		BBR_RS18965	0.71	+0.0
2,034,199	+		BBR_RS18965	0.71	+0.4
2,034,199	+		BBR_RS18965	0.71	+0.4
2,034,199	+		BBR_RS18965	0.71	+1.5
2,034,199	+		BBR_RS18965	0.71	+1.1
2,034,232	-		BBR_RS18965	0.73	-0.9
2,034,235	+		BBR_RS18965	0.73	+1.0
2,034,243	-		BBR_RS18965	0.73	-0.6
2,034,254	+		BBR_RS18965	0.74	-1.6
2,034,262	-		BBR_RS18965	0.74	-2.2
2,034,287	+		BBR_RS18965	0.75	-0.8
2,034,294	+		BBR_RS18965	0.75	+0.7
2,034,350	+		BBR_RS18965	0.77	-0.3
2,034,386	+		BBR_RS18965	0.79	+1.2
2,034,387	-		BBR_RS18965	0.79	+1.2
2,034,401	+		BBR_RS18965	0.79	+1.3
2,034,409	-		BBR_RS18965	0.80	+0.6
2,034,415	+		BBR_RS18965	0.80	+0.1
2,034,444	+		BBR_RS18965	0.81	+0.9
2,034,452	-		BBR_RS18965	0.82	-0.1
2,034,455	+		BBR_RS18965	0.82	+0.4
2,034,455	+		BBR_RS18965	0.82	-0.6
2,034,465	+		BBR_RS18965	0.82	+0.1
2,034,465	+		BBR_RS18965	0.82	+0.8
2,034,473	-		BBR_RS18965	0.82	+0.7
2,034,492	-		BBR_RS18965	0.83	-0.1
2,034,500	+		BBR_RS18965	0.83	+0.9
2,034,515	-		BBR_RS18965	0.84	+0.7
2,034,535	-		BBR_RS18965	0.85	+1.2
2,034,559	-		BBR_RS18965	0.86	+1.5
2,034,602	-		BBR_RS18965	0.87	+0.4
2,034,606	+		BBR_RS18965	0.88	-0.3
2,034,606	+		BBR_RS18965	0.88	+1.4
2,034,614	-		BBR_RS18965	0.88	-0.5
2,034,614	-		BBR_RS18965	0.88	+0.6
2,034,614	-		BBR_RS18965	0.88	+0.6
2,034,632	+		BBR_RS18965	0.89	-0.3
2,034,632	+		BBR_RS18965	0.89	+0.1
2,034,635	+		BBR_RS18965	0.89	+0.1
2,034,643	-		BBR_RS18965	0.89	-1.0
2,034,650	-		BBR_RS18965	0.89	+0.2
2,034,658	-		BBR_RS18965	0.90	-0.1
2,034,667	+				-0.2
2,034,667	+				-0.3
2,034,668	-				-1.6
2,034,676	-				+0.2
2,034,702	-				+0.1
2,034,702	-				-0.6
2,034,703	+				-0.4
2,034,710	+				-0.3
2,034,775	+				+1.0
2,034,783	+				+0.7
2,034,783	-				-0.1
2,034,797	+				+2.7
2,034,797	+				+0.7
2,034,798	+				+1.2
2,034,808	+				+0.5
2,034,819	+				+0.9
2,034,819	+				+1.2
2,034,822	-				-0.1
2,034,822	-				+0.8
2,034,822	-				+0.1
2,034,843	-				+0.1
2,034,847	+				+0.7
2,034,862	+				+1.8
2,034,869	+				+0.0
2,034,891	+				+0.9
2,034,909	+				-1.5
2,034,909	-				-2.3
2,034,910	+				+0.2
2,034,918	-				-0.6
2,034,929	+				+0.4
2,034,932	-				-0.7
2,034,949	+				+0.6
2,034,994	-				+0.1
2,034,999	-				-0.8
2,035,001	-				-0.7
2,035,026	-				+0.1
2,035,036	-				-0.5
2,035,038	+				-1.7
2,035,038	+				+0.7
2,035,046	-				+0.4
2,035,046	-				+0.4
2,035,046	-				-2.8
2,035,046	-				+0.3
2,035,046	-				+0.7
2,035,046	-				+0.6
2,035,062	+				+0.7
2,035,062	+				+1.4
2,035,072	-				+1.4
2,035,142	+				+0.2
2,035,145	-				-0.9
2,035,148	-				-0.6
2,035,148	-				-0.0
2,035,175	-				+0.7
2,035,175	-				+1.2
2,035,200	-				+0.7
2,035,303	+				-0.1
2,035,311	-				+0.3
2,035,384	-				+0.2
2,035,416	-				-0.0
2,035,464	+				+0.1
2,035,481	+				+0.9
2,035,492	+				-2.6
2,035,494	-				+0.2
2,035,519	-				+0.4
2,035,521	+				-1.2
2,035,524	-				+0.6
2,035,529	-				-0.7
2,035,529	-				+0.5
2,035,535	+				-0.6
2,035,543	+				-1.1
2,035,545	+				+0.1
2,035,545	+				-0.6
2,035,551	-				+0.5
2,035,551	-				+0.5
2,035,553	-				+1.6
2,035,553	-				+0.8
2,035,553	-				+0.4
2,035,553	-				-0.1
2,035,553	-				-0.1
2,035,580	-				+0.8
2,035,598	+				-1.8
2,035,601	-				-0.3
2,035,603	+				+0.2
2,035,618	-				+1.2
2,035,723	-				-0.2
2,035,723	-				-0.3
2,035,723	-				+0.6