Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS12760

Experiment: CDM1 without Aspartate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS12755 and BBR_RS12760 are separated by 104 nucleotidesBBR_RS12760 and BBR_RS12770 are separated by 70 nucleotidesBBR_RS12770 and BBR_RS12775 are separated by 469 nucleotides BBR_RS12755: BBR_RS12755 - DUF4365 domain-containing protein, at 612,761 to 615,565 _RS12755 BBR_RS12760: BBR_RS12760 - hypothetical protein, at 615,670 to 616,906 _RS12760 BBR_RS12770: BBR_RS12770 - hypothetical protein, at 616,977 to 617,183 _RS12770 BBR_RS12775: BBR_RS12775 - hypothetical protein, at 617,653 to 618,066 _RS12775 Position (kb) 615 616 617Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 614.693 kb on + strand, within BBR_RS12755at 614.706 kb on + strand, within BBR_RS12755at 614.718 kb on + strand, within BBR_RS12755at 614.741 kb on + strand, within BBR_RS12755at 614.750 kb on - strand, within BBR_RS12755at 614.758 kb on + strand, within BBR_RS12755at 614.758 kb on + strand, within BBR_RS12755at 614.773 kb on + strand, within BBR_RS12755at 614.877 kb on + strand, within BBR_RS12755at 614.877 kb on + strand, within BBR_RS12755at 614.886 kb on + strand, within BBR_RS12755at 614.886 kb on + strand, within BBR_RS12755at 614.886 kb on + strand, within BBR_RS12755at 614.887 kb on + strand, within BBR_RS12755at 614.895 kb on - strand, within BBR_RS12755at 614.895 kb on - strand, within BBR_RS12755at 614.895 kb on - strand, within BBR_RS12755at 614.933 kb on + strand, within BBR_RS12755at 614.988 kb on + strand, within BBR_RS12755at 614.988 kb on + strand, within BBR_RS12755at 614.988 kb on + strand, within BBR_RS12755at 614.989 kb on + strand, within BBR_RS12755at 614.996 kb on - strand, within BBR_RS12755at 614.996 kb on - strand, within BBR_RS12755at 614.996 kb on - strand, within BBR_RS12755at 614.996 kb on - strand, within BBR_RS12755at 614.998 kb on + strand, within BBR_RS12755at 615.050 kb on - strand, within BBR_RS12755at 615.079 kb on - strand, within BBR_RS12755at 615.133 kb on + strand, within BBR_RS12755at 615.135 kb on - strand, within BBR_RS12755at 615.145 kb on + strand, within BBR_RS12755at 615.156 kb on + strand, within BBR_RS12755at 615.163 kb on + strand, within BBR_RS12755at 615.163 kb on - strand, within BBR_RS12755at 615.168 kb on + strand, within BBR_RS12755at 615.168 kb on + strand, within BBR_RS12755at 615.170 kb on + strand, within BBR_RS12755at 615.178 kb on - strand, within BBR_RS12755at 615.251 kb on + strand, within BBR_RS12755at 615.251 kb on + strand, within BBR_RS12755at 615.251 kb on + strand, within BBR_RS12755at 615.251 kb on + strand, within BBR_RS12755at 615.251 kb on + strand, within BBR_RS12755at 615.251 kb on + strand, within BBR_RS12755at 615.259 kb on - strand, within BBR_RS12755at 615.259 kb on - strand, within BBR_RS12755at 615.263 kb on + strand, within BBR_RS12755at 615.267 kb on - strand, within BBR_RS12755at 615.273 kb on + strand, within BBR_RS12755at 615.273 kb on + strand, within BBR_RS12755at 615.273 kb on + strand, within BBR_RS12755at 615.273 kb on + strand, within BBR_RS12755at 615.273 kb on + strand, within BBR_RS12755at 615.278 kb on + strand, within BBR_RS12755at 615.322 kb on + strandat 615.322 kb on + strandat 615.322 kb on + strandat 615.329 kb on + strandat 615.329 kb on + strandat 615.390 kb on + strandat 615.390 kb on + strandat 615.395 kb on + strandat 615.400 kb on + strandat 615.415 kb on + strandat 615.415 kb on + strandat 615.452 kb on - strandat 615.452 kb on - strandat 615.467 kb on + strandat 615.467 kb on - strandat 615.489 kb on + strandat 615.489 kb on + strandat 615.594 kb on + strandat 615.599 kb on + strandat 615.803 kb on - strand, within BBR_RS12760at 615.900 kb on + strand, within BBR_RS12760at 615.923 kb on - strand, within BBR_RS12760at 615.988 kb on - strand, within BBR_RS12760at 616.086 kb on - strand, within BBR_RS12760at 616.087 kb on - strand, within BBR_RS12760at 616.103 kb on - strand, within BBR_RS12760at 616.140 kb on + strand, within BBR_RS12760at 616.140 kb on + strand, within BBR_RS12760at 616.146 kb on + strand, within BBR_RS12760at 616.148 kb on - strand, within BBR_RS12760at 616.148 kb on - strand, within BBR_RS12760at 616.153 kb on + strand, within BBR_RS12760at 616.154 kb on - strand, within BBR_RS12760at 616.154 kb on - strand, within BBR_RS12760at 616.169 kb on - strand, within BBR_RS12760at 616.178 kb on + strand, within BBR_RS12760at 616.187 kb on - strand, within BBR_RS12760at 616.201 kb on + strand, within BBR_RS12760at 616.201 kb on + strand, within BBR_RS12760at 616.202 kb on - strand, within BBR_RS12760at 616.209 kb on - strand, within BBR_RS12760at 616.273 kb on + strand, within BBR_RS12760at 616.304 kb on - strand, within BBR_RS12760at 616.305 kb on + strand, within BBR_RS12760at 616.307 kb on + strand, within BBR_RS12760at 616.338 kb on + strand, within BBR_RS12760at 616.338 kb on + strand, within BBR_RS12760at 616.345 kb on - strand, within BBR_RS12760at 616.379 kb on + strand, within BBR_RS12760at 616.379 kb on + strand, within BBR_RS12760at 616.450 kb on + strand, within BBR_RS12760at 616.536 kb on - strand, within BBR_RS12760at 616.689 kb on + strand, within BBR_RS12760at 616.706 kb on - strand, within BBR_RS12760at 616.721 kb on - strand, within BBR_RS12760at 616.779 kb on - strand, within BBR_RS12760at 616.799 kb on + strandat 616.799 kb on + strandat 616.799 kb on + strandat 616.807 kb on - strandat 616.807 kb on - strandat 616.814 kb on - strandat 616.814 kb on - strandat 616.825 kb on - strandat 616.845 kb on - strandat 616.871 kb on + strandat 616.879 kb on - strandat 616.887 kb on + strandat 616.891 kb on - strandat 616.899 kb on - strandat 617.039 kb on + strand, within BBR_RS12770at 617.053 kb on + strand, within BBR_RS12770at 617.067 kb on + strand, within BBR_RS12770at 617.085 kb on + strand, within BBR_RS12770at 617.093 kb on - strand, within BBR_RS12770at 617.103 kb on - strand, within BBR_RS12770at 617.143 kb on - strand, within BBR_RS12770at 617.177 kb on + strandat 617.215 kb on - strandat 617.215 kb on - strandat 617.221 kb on - strandat 617.261 kb on + strandat 617.263 kb on + strandat 617.294 kb on - strandat 617.343 kb on + strandat 617.345 kb on + strandat 617.345 kb on + strandat 617.345 kb on + strandat 617.351 kb on - strandat 617.353 kb on + strandat 617.353 kb on + strandat 617.415 kb on + strandat 617.439 kb on + strandat 617.454 kb on - strandat 617.462 kb on - strandat 617.529 kb on + strandat 617.555 kb on - strandat 617.560 kb on + strandat 617.601 kb on - strandat 617.627 kb on + strandat 617.627 kb on + strandat 617.627 kb on + strandat 617.627 kb on + strandat 617.627 kb on + strandat 617.672 kb on + strandat 617.680 kb on - strandat 617.735 kb on + strand, within BBR_RS12775at 617.803 kb on - strand, within BBR_RS12775at 617.863 kb on + strand, within BBR_RS12775at 617.865 kb on - strand, within BBR_RS12775

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Per-strain Table

Position Strand Gene LocusTag Fraction CDM1 without Aspartate
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614,693 + BBR_RS12755 0.69 -2.3
614,706 + BBR_RS12755 0.69 -2.1
614,718 + BBR_RS12755 0.70 -0.4
614,741 + BBR_RS12755 0.71 -2.7
614,750 - BBR_RS12755 0.71 -4.8
614,758 + BBR_RS12755 0.71 -1.6
614,758 + BBR_RS12755 0.71 -1.1
614,773 + BBR_RS12755 0.72 -3.2
614,877 + BBR_RS12755 0.75 -1.3
614,877 + BBR_RS12755 0.75 -1.0
614,886 + BBR_RS12755 0.76 -2.8
614,886 + BBR_RS12755 0.76 -2.4
614,886 + BBR_RS12755 0.76 +1.6
614,887 + BBR_RS12755 0.76 -0.8
614,895 - BBR_RS12755 0.76 -2.7
614,895 - BBR_RS12755 0.76 -1.7
614,895 - BBR_RS12755 0.76 -4.5
614,933 + BBR_RS12755 0.77 -0.7
614,988 + BBR_RS12755 0.79 -1.5
614,988 + BBR_RS12755 0.79 -2.3
614,988 + BBR_RS12755 0.79 -2.4
614,989 + BBR_RS12755 0.79 -1.4
614,996 - BBR_RS12755 0.80 -3.3
614,996 - BBR_RS12755 0.80 -2.5
614,996 - BBR_RS12755 0.80 -1.4
614,996 - BBR_RS12755 0.80 -2.5
614,998 + BBR_RS12755 0.80 -0.6
615,050 - BBR_RS12755 0.82 -3.0
615,079 - BBR_RS12755 0.83 -2.2
615,133 + BBR_RS12755 0.85 -2.0
615,135 - BBR_RS12755 0.85 -1.9
615,145 + BBR_RS12755 0.85 -2.1
615,156 + BBR_RS12755 0.85 -1.4
615,163 + BBR_RS12755 0.86 -0.3
615,163 - BBR_RS12755 0.86 -3.2
615,168 + BBR_RS12755 0.86 +1.2
615,168 + BBR_RS12755 0.86 -0.9
615,170 + BBR_RS12755 0.86 -1.7
615,178 - BBR_RS12755 0.86 -2.0
615,251 + BBR_RS12755 0.89 -1.4
615,251 + BBR_RS12755 0.89 -2.7
615,251 + BBR_RS12755 0.89 -1.1
615,251 + BBR_RS12755 0.89 -0.5
615,251 + BBR_RS12755 0.89 -1.4
615,251 + BBR_RS12755 0.89 -1.7
615,259 - BBR_RS12755 0.89 -0.5
615,259 - BBR_RS12755 0.89 -3.8
615,263 + BBR_RS12755 0.89 -0.9
615,267 - BBR_RS12755 0.89 -2.4
615,273 + BBR_RS12755 0.90 -2.8
615,273 + BBR_RS12755 0.90 -2.2
615,273 + BBR_RS12755 0.90 -1.0
615,273 + BBR_RS12755 0.90 -2.3
615,273 + BBR_RS12755 0.90 -1.5
615,278 + BBR_RS12755 0.90 -0.7
615,322 + -1.7
615,322 + -0.9
615,322 + -0.4
615,329 + -1.2
615,329 + -2.7
615,390 + -1.1
615,390 + -1.0
615,395 + -2.4
615,400 + -2.7
615,415 + -1.6
615,415 + -2.4
615,452 - -2.2
615,452 - -1.9
615,467 + -1.8
615,467 - -2.7
615,489 + -2.7
615,489 + -2.2
615,594 + -2.9
615,599 + -2.4
615,803 - BBR_RS12760 0.11 -2.3
615,900 + BBR_RS12760 0.19 -1.6
615,923 - BBR_RS12760 0.20 -1.6
615,988 - BBR_RS12760 0.26 -2.9
616,086 - BBR_RS12760 0.34 +0.3
616,087 - BBR_RS12760 0.34 -0.9
616,103 - BBR_RS12760 0.35 -3.6
616,140 + BBR_RS12760 0.38 -2.0
616,140 + BBR_RS12760 0.38 -2.4
616,146 + BBR_RS12760 0.38 -2.7
616,148 - BBR_RS12760 0.39 -2.4
616,148 - BBR_RS12760 0.39 -2.2
616,153 + BBR_RS12760 0.39 -2.4
616,154 - BBR_RS12760 0.39 -2.1
616,154 - BBR_RS12760 0.39 -1.9
616,169 - BBR_RS12760 0.40 -3.4
616,178 + BBR_RS12760 0.41 -1.8
616,187 - BBR_RS12760 0.42 +0.0
616,201 + BBR_RS12760 0.43 -3.4
616,201 + BBR_RS12760 0.43 -2.3
616,202 - BBR_RS12760 0.43 -1.8
616,209 - BBR_RS12760 0.44 -3.1
616,273 + BBR_RS12760 0.49 -1.9
616,304 - BBR_RS12760 0.51 -1.3
616,305 + BBR_RS12760 0.51 -3.9
616,307 + BBR_RS12760 0.51 -2.5
616,338 + BBR_RS12760 0.54 -3.6
616,338 + BBR_RS12760 0.54 -3.5
616,345 - BBR_RS12760 0.55 -3.7
616,379 + BBR_RS12760 0.57 -3.1
616,379 + BBR_RS12760 0.57 -4.5
616,450 + BBR_RS12760 0.63 -1.9
616,536 - BBR_RS12760 0.70 -3.5
616,689 + BBR_RS12760 0.82 -3.4
616,706 - BBR_RS12760 0.84 -3.6
616,721 - BBR_RS12760 0.85 -2.4
616,779 - BBR_RS12760 0.90 -2.0
616,799 + -1.5
616,799 + -1.4
616,799 + -2.9
616,807 - -4.6
616,807 - -3.8
616,814 - -2.3
616,814 - -1.9
616,825 - -2.3
616,845 - -2.9
616,871 + -2.9
616,879 - -2.6
616,887 + -2.8
616,891 - -2.5
616,899 - -4.1
617,039 + BBR_RS12770 0.30 -2.3
617,053 + BBR_RS12770 0.37 -2.1
617,067 + BBR_RS12770 0.43 -2.4
617,085 + BBR_RS12770 0.52 -0.5
617,093 - BBR_RS12770 0.56 -2.3
617,103 - BBR_RS12770 0.61 -3.1
617,143 - BBR_RS12770 0.80 -1.4
617,177 + -0.8
617,215 - -2.0
617,215 - -1.5
617,221 - -0.9
617,261 + -0.3
617,263 + -1.0
617,294 - -1.4
617,343 + -0.9
617,345 + -2.8
617,345 + -3.6
617,345 + -2.0
617,351 - -1.7
617,353 + +1.6
617,353 + -2.1
617,415 + -1.2
617,439 + -0.7
617,454 - -1.4
617,462 - -1.0
617,529 + -0.5
617,555 - -2.9
617,560 + -2.5
617,601 - -3.5
617,627 + -3.3
617,627 + -3.0
617,627 + -2.7
617,627 + -1.3
617,627 + -2.5
617,672 + -2.7
617,680 - -0.2
617,735 + BBR_RS12775 0.20 -1.9
617,803 - BBR_RS12775 0.36 -2.3
617,863 + BBR_RS12775 0.51 -0.6
617,865 - BBR_RS12775 0.51 -2.0

Or see this region's nucleotide sequence