Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_27440

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_27430 and AO356_27435 are separated by 22 nucleotidesAO356_27435 and AO356_27440 are separated by 3 nucleotidesAO356_27440 and AO356_27445 overlap by 4 nucleotides AO356_27430: AO356_27430 - hypothetical protein, at 6,251,109 to 6,251,804 _27430 AO356_27435: AO356_27435 - 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase, at 6,251,827 to 6,252,720 _27435 AO356_27440: AO356_27440 - 2-keto-4-pentenoate hydratase, at 6,252,724 to 6,253,524 _27440 AO356_27445: AO356_27445 - IclR family transcriptional regulator, at 6,253,521 to 6,254,327 _27445 Position (kb) 6252 6253 6254Strain fitness (log2 ratio) -2 -1 0 1 2 3at 6251.734 kb on + strand, within AO356_27430at 6251.734 kb on + strand, within AO356_27430at 6251.782 kb on - strandat 6251.782 kb on - strandat 6251.804 kb on + strandat 6251.882 kb on + strandat 6251.882 kb on + strandat 6251.882 kb on + strandat 6251.882 kb on + strandat 6251.883 kb on - strandat 6251.883 kb on - strandat 6251.883 kb on - strandat 6251.883 kb on - strandat 6252.045 kb on - strand, within AO356_27435at 6252.045 kb on - strand, within AO356_27435at 6252.055 kb on - strand, within AO356_27435at 6252.084 kb on + strand, within AO356_27435at 6252.228 kb on - strand, within AO356_27435at 6252.456 kb on + strand, within AO356_27435at 6252.456 kb on + strand, within AO356_27435at 6252.457 kb on - strand, within AO356_27435at 6252.483 kb on - strand, within AO356_27435at 6252.483 kb on - strand, within AO356_27435at 6252.520 kb on + strand, within AO356_27435at 6252.520 kb on + strand, within AO356_27435at 6252.521 kb on - strand, within AO356_27435at 6252.521 kb on - strand, within AO356_27435at 6252.712 kb on + strandat 6252.713 kb on - strandat 6252.726 kb on - strandat 6252.821 kb on + strand, within AO356_27440at 6252.821 kb on + strand, within AO356_27440at 6252.821 kb on + strand, within AO356_27440at 6252.822 kb on - strand, within AO356_27440at 6252.822 kb on - strand, within AO356_27440at 6253.045 kb on + strand, within AO356_27440at 6253.045 kb on + strand, within AO356_27440at 6253.045 kb on + strand, within AO356_27440at 6253.046 kb on - strand, within AO356_27440at 6253.092 kb on + strand, within AO356_27440at 6253.092 kb on + strand, within AO356_27440at 6253.092 kb on + strand, within AO356_27440at 6253.093 kb on - strand, within AO356_27440at 6253.093 kb on - strand, within AO356_27440at 6253.093 kb on - strand, within AO356_27440at 6253.161 kb on + strand, within AO356_27440at 6253.162 kb on - strand, within AO356_27440at 6253.162 kb on - strand, within AO356_27440at 6253.163 kb on + strand, within AO356_27440at 6253.163 kb on + strand, within AO356_27440at 6253.164 kb on - strand, within AO356_27440at 6253.164 kb on - strand, within AO356_27440at 6253.164 kb on - strand, within AO356_27440at 6253.164 kb on - strand, within AO356_27440at 6253.295 kb on - strand, within AO356_27440at 6253.524 kb on + strandat 6253.524 kb on + strandat 6253.524 kb on + strandat 6253.525 kb on - strandat 6253.525 kb on - strandat 6253.525 kb on - strandat 6253.613 kb on - strand, within AO356_27445at 6253.613 kb on - strand, within AO356_27445at 6253.919 kb on - strand, within AO356_27445at 6253.952 kb on - strand, within AO356_27445at 6253.956 kb on - strand, within AO356_27445at 6253.956 kb on - strand, within AO356_27445at 6253.956 kb on - strand, within AO356_27445at 6254.098 kb on - strand, within AO356_27445at 6254.098 kb on - strand, within AO356_27445at 6254.098 kb on - strand, within AO356_27445at 6254.098 kb on - strand, within AO356_27445at 6254.098 kb on - strand, within AO356_27445at 6254.098 kb on - strand, within AO356_27445at 6254.510 kb on + strandat 6254.510 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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6,251,734 + AO356_27430 0.90 +0.7
6,251,734 + AO356_27430 0.90 -0.3
6,251,782 - -0.6
6,251,782 - +0.1
6,251,804 + -0.1
6,251,882 + -0.3
6,251,882 + +1.4
6,251,882 + +3.1
6,251,882 + +0.3
6,251,883 - +0.5
6,251,883 - +0.0
6,251,883 - -0.5
6,251,883 - +0.4
6,252,045 - AO356_27435 0.24 -0.2
6,252,045 - AO356_27435 0.24 +1.3
6,252,055 - AO356_27435 0.26 -0.2
6,252,084 + AO356_27435 0.29 +0.5
6,252,228 - AO356_27435 0.45 +1.0
6,252,456 + AO356_27435 0.70 -0.1
6,252,456 + AO356_27435 0.70 +0.1
6,252,457 - AO356_27435 0.70 -0.2
6,252,483 - AO356_27435 0.73 -0.3
6,252,483 - AO356_27435 0.73 -0.1
6,252,520 + AO356_27435 0.78 +1.2
6,252,520 + AO356_27435 0.78 +1.0
6,252,521 - AO356_27435 0.78 +0.7
6,252,521 - AO356_27435 0.78 -0.1
6,252,712 + -0.3
6,252,713 - -0.6
6,252,726 - +0.5
6,252,821 + AO356_27440 0.12 +0.3
6,252,821 + AO356_27440 0.12 -0.2
6,252,821 + AO356_27440 0.12 +0.2
6,252,822 - AO356_27440 0.12 +0.3
6,252,822 - AO356_27440 0.12 -0.3
6,253,045 + AO356_27440 0.40 +0.3
6,253,045 + AO356_27440 0.40 +0.8
6,253,045 + AO356_27440 0.40 +0.9
6,253,046 - AO356_27440 0.40 +0.3
6,253,092 + AO356_27440 0.46 +0.5
6,253,092 + AO356_27440 0.46 +0.5
6,253,092 + AO356_27440 0.46 +0.2
6,253,093 - AO356_27440 0.46 -0.2
6,253,093 - AO356_27440 0.46 +0.5
6,253,093 - AO356_27440 0.46 -0.6
6,253,161 + AO356_27440 0.55 -0.6
6,253,162 - AO356_27440 0.55 +0.3
6,253,162 - AO356_27440 0.55 +0.3
6,253,163 + AO356_27440 0.55 -0.3
6,253,163 + AO356_27440 0.55 -0.2
6,253,164 - AO356_27440 0.55 +0.1
6,253,164 - AO356_27440 0.55 -0.0
6,253,164 - AO356_27440 0.55 +0.3
6,253,164 - AO356_27440 0.55 +0.7
6,253,295 - AO356_27440 0.71 -2.0
6,253,524 + +0.5
6,253,524 + +0.1
6,253,524 + +0.3
6,253,525 - +0.2
6,253,525 - +0.0
6,253,525 - -0.2
6,253,613 - AO356_27445 0.11 -2.3
6,253,613 - AO356_27445 0.11 -1.8
6,253,919 - AO356_27445 0.49 -1.0
6,253,952 - AO356_27445 0.53 -2.3
6,253,956 - AO356_27445 0.54 -0.6
6,253,956 - AO356_27445 0.54 -1.6
6,253,956 - AO356_27445 0.54 -0.5
6,254,098 - AO356_27445 0.71 -1.8
6,254,098 - AO356_27445 0.71 -0.8
6,254,098 - AO356_27445 0.71 -1.1
6,254,098 - AO356_27445 0.71 -1.0
6,254,098 - AO356_27445 0.71 -1.1
6,254,098 - AO356_27445 0.71 -1.5
6,254,510 + -1.0
6,254,510 + -0.1

Or see this region's nucleotide sequence