Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_26575

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_26565 and AO356_26570 are separated by 11 nucleotidesAO356_26570 and AO356_26575 are separated by 107 nucleotidesAO356_26575 and AO356_26580 are separated by 136 nucleotides AO356_26565: AO356_26565 - thioredoxin peroxidase, at 6,048,210 to 6,048,752 _26565 AO356_26570: AO356_26570 - disulfide bond formation protein DsbA, at 6,048,764 to 6,049,294 _26570 AO356_26575: AO356_26575 - low temperature requirement protein A, at 6,049,402 to 6,050,502 _26575 AO356_26580: AO356_26580 - methyltransferase, at 6,050,639 to 6,051,454 _26580 Position (kb) 6049 6050 6051Strain fitness (log2 ratio) -1 0 1 2at 6048.417 kb on + strand, within AO356_26565at 6048.418 kb on - strand, within AO356_26565at 6048.418 kb on - strand, within AO356_26565at 6048.431 kb on - strand, within AO356_26565at 6048.447 kb on + strand, within AO356_26565at 6048.448 kb on - strand, within AO356_26565at 6048.467 kb on + strand, within AO356_26565at 6048.573 kb on + strand, within AO356_26565at 6048.582 kb on + strand, within AO356_26565at 6048.582 kb on + strand, within AO356_26565at 6048.583 kb on - strand, within AO356_26565at 6048.583 kb on - strand, within AO356_26565at 6048.605 kb on + strand, within AO356_26565at 6048.605 kb on + strand, within AO356_26565at 6048.606 kb on - strand, within AO356_26565at 6048.654 kb on + strand, within AO356_26565at 6048.655 kb on - strand, within AO356_26565at 6048.655 kb on - strand, within AO356_26565at 6048.655 kb on - strand, within AO356_26565at 6048.655 kb on - strand, within AO356_26565at 6048.655 kb on - strand, within AO356_26565at 6048.787 kb on - strandat 6048.878 kb on + strand, within AO356_26570at 6048.897 kb on + strand, within AO356_26570at 6048.898 kb on - strand, within AO356_26570at 6048.898 kb on - strand, within AO356_26570at 6048.898 kb on - strand, within AO356_26570at 6048.996 kb on - strand, within AO356_26570at 6049.090 kb on - strand, within AO356_26570at 6049.139 kb on - strand, within AO356_26570at 6049.142 kb on + strand, within AO356_26570at 6049.142 kb on + strand, within AO356_26570at 6049.143 kb on - strand, within AO356_26570at 6049.230 kb on - strand, within AO356_26570at 6049.368 kb on - strandat 6049.368 kb on - strandat 6049.418 kb on - strandat 6049.630 kb on - strand, within AO356_26575at 6049.735 kb on + strand, within AO356_26575at 6050.000 kb on + strand, within AO356_26575at 6050.074 kb on + strand, within AO356_26575at 6050.132 kb on - strand, within AO356_26575at 6050.356 kb on - strand, within AO356_26575at 6050.372 kb on + strand, within AO356_26575at 6050.376 kb on - strand, within AO356_26575at 6050.441 kb on + strandat 6050.521 kb on + strandat 6050.555 kb on + strandat 6050.556 kb on - strandat 6050.556 kb on - strandat 6050.640 kb on + strandat 6050.640 kb on + strandat 6050.672 kb on - strandat 6050.731 kb on + strand, within AO356_26580at 6050.764 kb on - strand, within AO356_26580at 6050.808 kb on + strand, within AO356_26580at 6050.809 kb on - strand, within AO356_26580at 6050.812 kb on - strand, within AO356_26580at 6050.832 kb on + strand, within AO356_26580at 6050.832 kb on + strand, within AO356_26580at 6050.833 kb on - strand, within AO356_26580at 6050.844 kb on + strand, within AO356_26580at 6050.844 kb on + strand, within AO356_26580at 6050.844 kb on + strand, within AO356_26580at 6050.845 kb on - strand, within AO356_26580at 6050.845 kb on - strand, within AO356_26580at 6050.845 kb on - strand, within AO356_26580at 6050.972 kb on - strand, within AO356_26580at 6051.029 kb on - strand, within AO356_26580at 6051.029 kb on - strand, within AO356_26580at 6051.029 kb on - strand, within AO356_26580at 6051.054 kb on + strand, within AO356_26580at 6051.054 kb on + strand, within AO356_26580at 6051.054 kb on + strand, within AO356_26580at 6051.054 kb on + strand, within AO356_26580at 6051.055 kb on - strand, within AO356_26580at 6051.061 kb on + strand, within AO356_26580at 6051.061 kb on + strand, within AO356_26580at 6051.061 kb on + strand, within AO356_26580at 6051.183 kb on + strand, within AO356_26580at 6051.183 kb on + strand, within AO356_26580at 6051.184 kb on - strand, within AO356_26580at 6051.186 kb on + strand, within AO356_26580at 6051.187 kb on - strand, within AO356_26580at 6051.187 kb on - strand, within AO356_26580at 6051.187 kb on - strand, within AO356_26580at 6051.205 kb on + strand, within AO356_26580at 6051.205 kb on + strand, within AO356_26580at 6051.205 kb on + strand, within AO356_26580at 6051.206 kb on - strand, within AO356_26580at 6051.214 kb on - strand, within AO356_26580at 6051.303 kb on - strand, within AO356_26580at 6051.303 kb on - strand, within AO356_26580at 6051.337 kb on - strand, within AO356_26580at 6051.378 kb on + strandat 6051.378 kb on + strandat 6051.379 kb on - strandat 6051.379 kb on - strandat 6051.379 kb on - strandat 6051.405 kb on + strandat 6051.405 kb on + strandat 6051.406 kb on - strandat 6051.437 kb on - strandat 6051.456 kb on + strandat 6051.457 kb on - strandat 6051.457 kb on - strandat 6051.457 kb on - strandat 6051.489 kb on + strandat 6051.490 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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6,048,417 + AO356_26565 0.38 +0.3
6,048,418 - AO356_26565 0.38 +1.5
6,048,418 - AO356_26565 0.38 +0.4
6,048,431 - AO356_26565 0.41 -0.1
6,048,447 + AO356_26565 0.44 -1.3
6,048,448 - AO356_26565 0.44 +0.9
6,048,467 + AO356_26565 0.47 +0.1
6,048,573 + AO356_26565 0.67 +0.5
6,048,582 + AO356_26565 0.69 -0.5
6,048,582 + AO356_26565 0.69 +0.6
6,048,583 - AO356_26565 0.69 +0.2
6,048,583 - AO356_26565 0.69 +0.6
6,048,605 + AO356_26565 0.73 -0.2
6,048,605 + AO356_26565 0.73 +0.5
6,048,606 - AO356_26565 0.73 -0.8
6,048,654 + AO356_26565 0.82 +0.4
6,048,655 - AO356_26565 0.82 +1.2
6,048,655 - AO356_26565 0.82 +1.0
6,048,655 - AO356_26565 0.82 +0.5
6,048,655 - AO356_26565 0.82 +0.9
6,048,655 - AO356_26565 0.82 -1.5
6,048,787 - +0.0
6,048,878 + AO356_26570 0.21 +0.2
6,048,897 + AO356_26570 0.25 +0.9
6,048,898 - AO356_26570 0.25 +0.4
6,048,898 - AO356_26570 0.25 +0.8
6,048,898 - AO356_26570 0.25 +1.1
6,048,996 - AO356_26570 0.44 +0.3
6,049,090 - AO356_26570 0.61 +0.9
6,049,139 - AO356_26570 0.71 +0.5
6,049,142 + AO356_26570 0.71 +0.1
6,049,142 + AO356_26570 0.71 +1.9
6,049,143 - AO356_26570 0.71 -0.2
6,049,230 - AO356_26570 0.88 +1.2
6,049,368 - +1.4
6,049,368 - +1.3
6,049,418 - +1.9
6,049,630 - AO356_26575 0.21 +0.4
6,049,735 + AO356_26575 0.30 +0.8
6,050,000 + AO356_26575 0.54 -0.2
6,050,074 + AO356_26575 0.61 -0.1
6,050,132 - AO356_26575 0.66 +0.5
6,050,356 - AO356_26575 0.87 +0.1
6,050,372 + AO356_26575 0.88 +0.5
6,050,376 - AO356_26575 0.88 +0.2
6,050,441 + -1.3
6,050,521 + +1.5
6,050,555 + +0.7
6,050,556 - -0.5
6,050,556 - -0.6
6,050,640 + +0.5
6,050,640 + -0.5
6,050,672 - -1.3
6,050,731 + AO356_26580 0.11 +0.9
6,050,764 - AO356_26580 0.15 -0.5
6,050,808 + AO356_26580 0.21 +0.8
6,050,809 - AO356_26580 0.21 -0.1
6,050,812 - AO356_26580 0.21 +0.2
6,050,832 + AO356_26580 0.24 +0.2
6,050,832 + AO356_26580 0.24 +0.0
6,050,833 - AO356_26580 0.24 -0.3
6,050,844 + AO356_26580 0.25 +0.7
6,050,844 + AO356_26580 0.25 -0.2
6,050,844 + AO356_26580 0.25 +0.1
6,050,845 - AO356_26580 0.25 +0.3
6,050,845 - AO356_26580 0.25 +1.4
6,050,845 - AO356_26580 0.25 +0.3
6,050,972 - AO356_26580 0.41 +0.2
6,051,029 - AO356_26580 0.48 +0.2
6,051,029 - AO356_26580 0.48 +0.4
6,051,029 - AO356_26580 0.48 +0.4
6,051,054 + AO356_26580 0.51 +1.0
6,051,054 + AO356_26580 0.51 -0.5
6,051,054 + AO356_26580 0.51 -0.3
6,051,054 + AO356_26580 0.51 +0.1
6,051,055 - AO356_26580 0.51 -0.5
6,051,061 + AO356_26580 0.52 +0.4
6,051,061 + AO356_26580 0.52 +0.9
6,051,061 + AO356_26580 0.52 +1.4
6,051,183 + AO356_26580 0.67 +0.7
6,051,183 + AO356_26580 0.67 +1.3
6,051,184 - AO356_26580 0.67 -0.8
6,051,186 + AO356_26580 0.67 -0.5
6,051,187 - AO356_26580 0.67 -1.7
6,051,187 - AO356_26580 0.67 -0.6
6,051,187 - AO356_26580 0.67 +0.5
6,051,205 + AO356_26580 0.69 -1.6
6,051,205 + AO356_26580 0.69 +0.2
6,051,205 + AO356_26580 0.69 +0.1
6,051,206 - AO356_26580 0.69 -0.2
6,051,214 - AO356_26580 0.70 +0.5
6,051,303 - AO356_26580 0.81 +0.4
6,051,303 - AO356_26580 0.81 +0.4
6,051,337 - AO356_26580 0.86 +0.4
6,051,378 + -0.1
6,051,378 + +1.5
6,051,379 - +1.4
6,051,379 - -0.6
6,051,379 - -0.2
6,051,405 + -1.0
6,051,405 + +0.1
6,051,406 - -0.3
6,051,437 - -0.9
6,051,456 + +0.5
6,051,457 - +0.6
6,051,457 - +0.3
6,051,457 - +0.2
6,051,489 + -0.4
6,051,490 - -1.0

Or see this region's nucleotide sequence