Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_23485

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_23480 and AO356_23485 are separated by 3 nucleotidesAO356_23485 and AO356_23490 overlap by 11 nucleotides AO356_23480: AO356_23480 - FAD-binding monooxygenase, at 5,265,267 to 5,267,030 _23480 AO356_23485: AO356_23485 - haloacid dehalogenase, at 5,267,034 to 5,267,645 _23485 AO356_23490: AO356_23490 - AMP-dependent synthetase, at 5,267,635 to 5,269,155 _23490 Position (kb) 5267 5268Strain fitness (log2 ratio) -2 -1 0 1 2at 5266.039 kb on + strand, within AO356_23480at 5266.039 kb on + strand, within AO356_23480at 5266.040 kb on - strand, within AO356_23480at 5266.061 kb on + strand, within AO356_23480at 5266.061 kb on + strand, within AO356_23480at 5266.062 kb on - strand, within AO356_23480at 5266.063 kb on + strand, within AO356_23480at 5266.063 kb on + strand, within AO356_23480at 5266.205 kb on + strand, within AO356_23480at 5266.206 kb on - strand, within AO356_23480at 5266.300 kb on + strand, within AO356_23480at 5266.300 kb on + strand, within AO356_23480at 5266.301 kb on - strand, within AO356_23480at 5266.360 kb on + strand, within AO356_23480at 5266.360 kb on + strand, within AO356_23480at 5266.361 kb on - strand, within AO356_23480at 5266.450 kb on + strand, within AO356_23480at 5266.717 kb on + strand, within AO356_23480at 5266.718 kb on - strand, within AO356_23480at 5266.729 kb on + strand, within AO356_23480at 5266.729 kb on + strand, within AO356_23480at 5266.730 kb on - strand, within AO356_23480at 5266.730 kb on - strand, within AO356_23480at 5267.110 kb on + strand, within AO356_23485at 5267.110 kb on + strand, within AO356_23485at 5267.110 kb on + strand, within AO356_23485at 5267.110 kb on + strand, within AO356_23485at 5267.110 kb on + strand, within AO356_23485at 5267.111 kb on - strand, within AO356_23485at 5267.111 kb on - strand, within AO356_23485at 5267.111 kb on - strand, within AO356_23485at 5267.111 kb on - strand, within AO356_23485at 5267.111 kb on - strand, within AO356_23485at 5267.111 kb on - strand, within AO356_23485at 5267.173 kb on - strand, within AO356_23485at 5267.173 kb on - strand, within AO356_23485at 5267.173 kb on - strand, within AO356_23485at 5267.243 kb on - strand, within AO356_23485at 5267.393 kb on - strand, within AO356_23485at 5267.437 kb on + strand, within AO356_23485at 5267.437 kb on + strand, within AO356_23485at 5267.438 kb on - strand, within AO356_23485at 5267.552 kb on + strand, within AO356_23485at 5267.563 kb on + strand, within AO356_23485at 5267.563 kb on + strand, within AO356_23485at 5267.563 kb on + strand, within AO356_23485at 5267.564 kb on - strand, within AO356_23485at 5267.802 kb on + strand, within AO356_23490at 5267.804 kb on + strand, within AO356_23490at 5267.804 kb on + strand, within AO356_23490at 5267.804 kb on + strand, within AO356_23490at 5267.804 kb on + strand, within AO356_23490at 5267.805 kb on - strand, within AO356_23490at 5268.008 kb on + strand, within AO356_23490at 5268.270 kb on - strand, within AO356_23490at 5268.335 kb on + strand, within AO356_23490at 5268.336 kb on - strand, within AO356_23490at 5268.489 kb on - strand, within AO356_23490at 5268.617 kb on + strand, within AO356_23490

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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5,266,039 + AO356_23480 0.44 +0.6
5,266,039 + AO356_23480 0.44 -0.6
5,266,040 - AO356_23480 0.44 +0.4
5,266,061 + AO356_23480 0.45 -0.2
5,266,061 + AO356_23480 0.45 +1.0
5,266,062 - AO356_23480 0.45 -0.4
5,266,063 + AO356_23480 0.45 -0.7
5,266,063 + AO356_23480 0.45 -1.4
5,266,205 + AO356_23480 0.53 -0.4
5,266,206 - AO356_23480 0.53 +0.5
5,266,300 + AO356_23480 0.59 +0.0
5,266,300 + AO356_23480 0.59 +1.0
5,266,301 - AO356_23480 0.59 +0.2
5,266,360 + AO356_23480 0.62 +0.7
5,266,360 + AO356_23480 0.62 -1.2
5,266,361 - AO356_23480 0.62 +0.7
5,266,450 + AO356_23480 0.67 +0.7
5,266,717 + AO356_23480 0.82 +0.1
5,266,718 - AO356_23480 0.82 +0.8
5,266,729 + AO356_23480 0.83 +0.2
5,266,729 + AO356_23480 0.83 -2.6
5,266,730 - AO356_23480 0.83 -0.2
5,266,730 - AO356_23480 0.83 -1.8
5,267,110 + AO356_23485 0.12 +0.7
5,267,110 + AO356_23485 0.12 -0.9
5,267,110 + AO356_23485 0.12 +0.7
5,267,110 + AO356_23485 0.12 +0.2
5,267,110 + AO356_23485 0.12 +0.2
5,267,111 - AO356_23485 0.13 +0.9
5,267,111 - AO356_23485 0.13 +1.8
5,267,111 - AO356_23485 0.13 +1.7
5,267,111 - AO356_23485 0.13 +1.5
5,267,111 - AO356_23485 0.13 +1.1
5,267,111 - AO356_23485 0.13 +1.2
5,267,173 - AO356_23485 0.23 +0.3
5,267,173 - AO356_23485 0.23 +0.9
5,267,173 - AO356_23485 0.23 +1.5
5,267,243 - AO356_23485 0.34 +1.2
5,267,393 - AO356_23485 0.59 -0.3
5,267,437 + AO356_23485 0.66 -0.6
5,267,437 + AO356_23485 0.66 +2.0
5,267,438 - AO356_23485 0.66 -0.3
5,267,552 + AO356_23485 0.85 -1.0
5,267,563 + AO356_23485 0.86 +0.0
5,267,563 + AO356_23485 0.86 +0.6
5,267,563 + AO356_23485 0.86 +0.9
5,267,564 - AO356_23485 0.87 -1.1
5,267,802 + AO356_23490 0.11 -0.3
5,267,804 + AO356_23490 0.11 +0.3
5,267,804 + AO356_23490 0.11 +0.0
5,267,804 + AO356_23490 0.11 -0.5
5,267,804 + AO356_23490 0.11 +0.0
5,267,805 - AO356_23490 0.11 -0.4
5,268,008 + AO356_23490 0.25 -1.0
5,268,270 - AO356_23490 0.42 +0.9
5,268,335 + AO356_23490 0.46 -1.5
5,268,336 - AO356_23490 0.46 +0.5
5,268,489 - AO356_23490 0.56 +0.6
5,268,617 + AO356_23490 0.65 +0.3

Or see this region's nucleotide sequence