Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_21925

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_21920 and AO356_21925 are separated by 86 nucleotidesAO356_21925 and AO356_21930 are separated by 292 nucleotides AO356_21920: AO356_21920 - AraC family transcriptional regulator, at 4,905,510 to 4,906,553 _21920 AO356_21925: AO356_21925 - hypothetical protein, at 4,906,640 to 4,907,053 _21925 AO356_21930: AO356_21930 - hypothetical protein, at 4,907,346 to 4,908,548 _21930 Position (kb) 4906 4907 4908Strain fitness (log2 ratio) -1 0 1at 4905.696 kb on + strand, within AO356_21920at 4905.696 kb on + strand, within AO356_21920at 4906.029 kb on + strand, within AO356_21920at 4906.029 kb on + strand, within AO356_21920at 4906.029 kb on + strand, within AO356_21920at 4906.029 kb on + strand, within AO356_21920at 4906.029 kb on + strand, within AO356_21920at 4906.029 kb on + strand, within AO356_21920at 4906.029 kb on + strand, within AO356_21920at 4906.029 kb on + strand, within AO356_21920at 4906.030 kb on - strand, within AO356_21920at 4906.030 kb on - strand, within AO356_21920at 4906.030 kb on - strand, within AO356_21920at 4906.030 kb on - strand, within AO356_21920at 4906.261 kb on + strand, within AO356_21920at 4906.261 kb on + strand, within AO356_21920at 4906.261 kb on + strand, within AO356_21920at 4906.261 kb on + strand, within AO356_21920at 4906.262 kb on - strand, within AO356_21920at 4906.365 kb on + strand, within AO356_21920at 4906.368 kb on + strand, within AO356_21920at 4906.368 kb on + strand, within AO356_21920at 4906.369 kb on - strand, within AO356_21920at 4906.515 kb on + strandat 4906.515 kb on + strandat 4906.516 kb on - strandat 4906.516 kb on - strandat 4906.739 kb on + strand, within AO356_21925at 4906.740 kb on - strand, within AO356_21925at 4906.740 kb on - strand, within AO356_21925at 4906.821 kb on + strand, within AO356_21925at 4906.821 kb on + strand, within AO356_21925at 4906.821 kb on + strand, within AO356_21925at 4906.821 kb on + strand, within AO356_21925at 4906.821 kb on + strand, within AO356_21925at 4906.822 kb on - strand, within AO356_21925at 4906.822 kb on - strand, within AO356_21925at 4906.822 kb on - strand, within AO356_21925at 4906.822 kb on - strand, within AO356_21925at 4906.822 kb on - strand, within AO356_21925at 4906.822 kb on - strand, within AO356_21925at 4906.822 kb on - strand, within AO356_21925at 4906.838 kb on + strand, within AO356_21925at 4906.839 kb on - strand, within AO356_21925at 4906.839 kb on - strand, within AO356_21925at 4906.839 kb on - strand, within AO356_21925at 4906.875 kb on + strand, within AO356_21925at 4906.876 kb on - strand, within AO356_21925at 4906.876 kb on - strand, within AO356_21925at 4906.887 kb on + strand, within AO356_21925at 4906.887 kb on + strand, within AO356_21925at 4906.887 kb on + strand, within AO356_21925at 4906.953 kb on + strand, within AO356_21925at 4906.953 kb on + strand, within AO356_21925at 4906.953 kb on + strand, within AO356_21925at 4906.975 kb on - strand, within AO356_21925at 4906.980 kb on + strand, within AO356_21925at 4906.980 kb on + strand, within AO356_21925at 4906.980 kb on + strand, within AO356_21925at 4906.981 kb on - strand, within AO356_21925at 4906.981 kb on - strand, within AO356_21925at 4907.028 kb on - strandat 4907.039 kb on + strandat 4907.040 kb on - strandat 4907.040 kb on - strandat 4907.069 kb on + strandat 4907.085 kb on - strandat 4907.192 kb on - strandat 4907.193 kb on + strandat 4907.276 kb on - strandat 4907.480 kb on - strand, within AO356_21930at 4907.480 kb on - strand, within AO356_21930at 4907.750 kb on - strand, within AO356_21930at 4907.750 kb on - strand, within AO356_21930at 4907.750 kb on - strand, within AO356_21930at 4907.750 kb on - strand, within AO356_21930at 4907.782 kb on + strand, within AO356_21930at 4907.782 kb on + strand, within AO356_21930at 4907.782 kb on + strand, within AO356_21930at 4907.782 kb on + strand, within AO356_21930at 4907.782 kb on + strand, within AO356_21930at 4907.782 kb on + strand, within AO356_21930at 4907.782 kb on + strand, within AO356_21930at 4907.783 kb on - strand, within AO356_21930at 4907.783 kb on - strand, within AO356_21930at 4907.783 kb on - strand, within AO356_21930at 4907.839 kb on + strand, within AO356_21930at 4907.840 kb on - strand, within AO356_21930at 4907.840 kb on - strand, within AO356_21930at 4907.952 kb on + strand, within AO356_21930at 4907.953 kb on - strand, within AO356_21930at 4907.953 kb on - strand, within AO356_21930

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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4,905,696 + AO356_21920 0.18 -0.5
4,905,696 + AO356_21920 0.18 -1.4
4,906,029 + AO356_21920 0.50 +0.6
4,906,029 + AO356_21920 0.50 -0.4
4,906,029 + AO356_21920 0.50 -0.3
4,906,029 + AO356_21920 0.50 -0.2
4,906,029 + AO356_21920 0.50 -0.5
4,906,029 + AO356_21920 0.50 +0.4
4,906,029 + AO356_21920 0.50 +0.3
4,906,029 + AO356_21920 0.50 +0.4
4,906,030 - AO356_21920 0.50 -0.6
4,906,030 - AO356_21920 0.50 +0.8
4,906,030 - AO356_21920 0.50 -0.5
4,906,030 - AO356_21920 0.50 -0.5
4,906,261 + AO356_21920 0.72 +0.8
4,906,261 + AO356_21920 0.72 -0.6
4,906,261 + AO356_21920 0.72 -0.3
4,906,261 + AO356_21920 0.72 -0.1
4,906,262 - AO356_21920 0.72 -1.0
4,906,365 + AO356_21920 0.82 +0.9
4,906,368 + AO356_21920 0.82 +0.8
4,906,368 + AO356_21920 0.82 -0.4
4,906,369 - AO356_21920 0.82 +1.0
4,906,515 + +0.4
4,906,515 + +0.4
4,906,516 - -0.4
4,906,516 - +0.4
4,906,739 + AO356_21925 0.24 +0.8
4,906,740 - AO356_21925 0.24 +0.1
4,906,740 - AO356_21925 0.24 -1.0
4,906,821 + AO356_21925 0.44 +0.6
4,906,821 + AO356_21925 0.44 -0.7
4,906,821 + AO356_21925 0.44 -0.3
4,906,821 + AO356_21925 0.44 -0.2
4,906,821 + AO356_21925 0.44 +0.5
4,906,822 - AO356_21925 0.44 +1.4
4,906,822 - AO356_21925 0.44 -0.6
4,906,822 - AO356_21925 0.44 +0.6
4,906,822 - AO356_21925 0.44 +0.4
4,906,822 - AO356_21925 0.44 +0.1
4,906,822 - AO356_21925 0.44 +0.7
4,906,822 - AO356_21925 0.44 +0.9
4,906,838 + AO356_21925 0.48 +0.4
4,906,839 - AO356_21925 0.48 +0.6
4,906,839 - AO356_21925 0.48 +0.4
4,906,839 - AO356_21925 0.48 +0.9
4,906,875 + AO356_21925 0.57 +0.2
4,906,876 - AO356_21925 0.57 -0.5
4,906,876 - AO356_21925 0.57 +0.8
4,906,887 + AO356_21925 0.60 -0.2
4,906,887 + AO356_21925 0.60 +0.1
4,906,887 + AO356_21925 0.60 +1.2
4,906,953 + AO356_21925 0.76 -1.4
4,906,953 + AO356_21925 0.76 +0.6
4,906,953 + AO356_21925 0.76 +0.2
4,906,975 - AO356_21925 0.81 +1.3
4,906,980 + AO356_21925 0.82 +0.0
4,906,980 + AO356_21925 0.82 -0.5
4,906,980 + AO356_21925 0.82 +0.3
4,906,981 - AO356_21925 0.82 +0.5
4,906,981 - AO356_21925 0.82 +0.4
4,907,028 - -0.1
4,907,039 + +0.1
4,907,040 - +0.6
4,907,040 - +0.0
4,907,069 + +0.6
4,907,085 - -0.1
4,907,192 - +0.5
4,907,193 + +0.4
4,907,276 - +0.2
4,907,480 - AO356_21930 0.11 +1.0
4,907,480 - AO356_21930 0.11 -1.1
4,907,750 - AO356_21930 0.34 +0.7
4,907,750 - AO356_21930 0.34 +0.5
4,907,750 - AO356_21930 0.34 +0.0
4,907,750 - AO356_21930 0.34 +1.0
4,907,782 + AO356_21930 0.36 +0.0
4,907,782 + AO356_21930 0.36 +0.6
4,907,782 + AO356_21930 0.36 -0.4
4,907,782 + AO356_21930 0.36 +0.1
4,907,782 + AO356_21930 0.36 -0.9
4,907,782 + AO356_21930 0.36 -0.6
4,907,782 + AO356_21930 0.36 +0.2
4,907,783 - AO356_21930 0.36 -1.3
4,907,783 - AO356_21930 0.36 +0.6
4,907,783 - AO356_21930 0.36 -0.1
4,907,839 + AO356_21930 0.41 -0.0
4,907,840 - AO356_21930 0.41 +0.5
4,907,840 - AO356_21930 0.41 -0.3
4,907,952 + AO356_21930 0.50 -0.3
4,907,953 - AO356_21930 0.50 +1.2
4,907,953 - AO356_21930 0.50 +1.4

Or see this region's nucleotide sequence