Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_21255 and AO356_21260 are separated by 180 nucleotides AO356_21260 and AO356_21265 are separated by 83 nucleotides AO356_21265 and AO356_21270 are separated by 232 nucleotides AO356_21270 and AO356_21275 overlap by 1 nucleotides AO356_21275 and AO356_21280 overlap by 1 nucleotides
AO356_21255: AO356_21255 - alpha/beta hydrolase, at 4,770,537 to 4,771,367
_21255
AO356_21260: AO356_21260 - 6-carboxy-5,6,7,8-tetrahydropterin synthase, at 4,771,548 to 4,771,904
_21260
AO356_21265: AO356_21265 - hypothetical protein, at 4,771,988 to 4,773,067
_21265
AO356_21270: AO356_21270 - peptidase, at 4,773,300 to 4,773,608
_21270
AO356_21275: AO356_21275 - peptidase, at 4,773,608 to 4,773,919
_21275
AO356_21280: AO356_21280 - transcriptional regulator, at 4,773,919 to 4,774,587
_21280
Position (kb)
4771
4772
4773
4774 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4771.201 kb on + strand, within AO356_21255 at 4771.202 kb on - strand, within AO356_21255 at 4771.202 kb on - strand, within AO356_21255 at 4771.202 kb on - strand, within AO356_21255 at 4771.252 kb on + strand, within AO356_21255 at 4771.253 kb on - strand, within AO356_21255 at 4771.253 kb on - strand, within AO356_21255 at 4771.253 kb on - strand, within AO356_21255 at 4771.339 kb on + strand at 4771.340 kb on - strand at 4771.340 kb on - strand at 4771.374 kb on + strand at 4771.407 kb on + strand at 4771.408 kb on - strand at 4771.408 kb on - strand at 4771.497 kb on + strand at 4771.497 kb on + strand at 4771.498 kb on - strand at 4771.498 kb on - strand at 4771.562 kb on - strand at 4771.562 kb on - strand at 4771.697 kb on - strand, within AO356_21260 at 4771.697 kb on - strand, within AO356_21260 at 4771.919 kb on + strand at 4771.919 kb on + strand at 4771.920 kb on - strand at 4771.920 kb on - strand at 4771.920 kb on - strand at 4771.990 kb on - strand at 4772.170 kb on - strand, within AO356_21265 at 4772.170 kb on - strand, within AO356_21265 at 4772.308 kb on - strand, within AO356_21265 at 4772.326 kb on - strand, within AO356_21265 at 4772.349 kb on + strand, within AO356_21265 at 4772.776 kb on - strand, within AO356_21265 at 4772.776 kb on - strand, within AO356_21265 at 4772.776 kb on - strand, within AO356_21265 at 4772.776 kb on - strand, within AO356_21265 at 4772.776 kb on - strand, within AO356_21265 at 4773.084 kb on + strand at 4773.098 kb on + strand at 4773.098 kb on + strand at 4773.098 kb on + strand at 4773.099 kb on - strand at 4773.100 kb on + strand at 4773.100 kb on + strand at 4773.101 kb on - strand at 4773.208 kb on - strand at 4773.260 kb on - strand at 4773.281 kb on + strand at 4773.282 kb on - strand at 4773.283 kb on + strand at 4773.283 kb on + strand at 4773.284 kb on - strand at 4773.284 kb on - strand at 4773.343 kb on + strand, within AO356_21270 at 4773.344 kb on - strand, within AO356_21270 at 4773.344 kb on - strand, within AO356_21270 at 4773.344 kb on - strand, within AO356_21270 at 4773.344 kb on - strand, within AO356_21270 at 4773.347 kb on + strand, within AO356_21270 at 4773.348 kb on - strand, within AO356_21270 at 4773.507 kb on + strand, within AO356_21270 at 4773.507 kb on + strand, within AO356_21270 at 4773.507 kb on + strand, within AO356_21270 at 4773.508 kb on - strand, within AO356_21270 at 4773.508 kb on - strand, within AO356_21270 at 4773.508 kb on - strand, within AO356_21270 at 4773.513 kb on + strand, within AO356_21270 at 4773.513 kb on + strand, within AO356_21270 at 4773.513 kb on + strand, within AO356_21270 at 4773.514 kb on - strand, within AO356_21270 at 4773.603 kb on - strand at 4773.607 kb on - strand at 4773.607 kb on - strand at 4773.607 kb on - strand at 4773.607 kb on - strand at 4773.824 kb on - strand, within AO356_21275 at 4773.824 kb on - strand, within AO356_21275 at 4773.824 kb on - strand, within AO356_21275 at 4773.908 kb on - strand at 4773.908 kb on - strand at 4774.030 kb on + strand, within AO356_21280 at 4774.031 kb on - strand, within AO356_21280 at 4774.051 kb on + strand, within AO356_21280 at 4774.051 kb on + strand, within AO356_21280 at 4774.051 kb on + strand, within AO356_21280
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 4,771,201 + AO356_21255 0.80 -1.1 4,771,202 - AO356_21255 0.80 -0.5 4,771,202 - AO356_21255 0.80 +0.7 4,771,202 - AO356_21255 0.80 +1.8 4,771,252 + AO356_21255 0.86 +0.3 4,771,253 - AO356_21255 0.86 +1.3 4,771,253 - AO356_21255 0.86 -0.5 4,771,253 - AO356_21255 0.86 -1.4 4,771,339 + +2.1 4,771,340 - -0.4 4,771,340 - +0.1 4,771,374 + -0.7 4,771,407 + +1.1 4,771,408 - +1.0 4,771,408 - +0.6 4,771,497 + +0.4 4,771,497 + -0.4 4,771,498 - +0.1 4,771,498 - +0.9 4,771,562 - +1.5 4,771,562 - +0.4 4,771,697 - AO356_21260 0.42 -2.2 4,771,697 - AO356_21260 0.42 -1.0 4,771,919 + +0.3 4,771,919 + +0.4 4,771,920 - +0.9 4,771,920 - +0.3 4,771,920 - -0.4 4,771,990 - +0.7 4,772,170 - AO356_21265 0.17 +0.2 4,772,170 - AO356_21265 0.17 -0.0 4,772,308 - AO356_21265 0.30 +0.6 4,772,326 - AO356_21265 0.31 +0.6 4,772,349 + AO356_21265 0.33 -1.1 4,772,776 - AO356_21265 0.73 +0.4 4,772,776 - AO356_21265 0.73 +1.6 4,772,776 - AO356_21265 0.73 -0.6 4,772,776 - AO356_21265 0.73 +0.8 4,772,776 - AO356_21265 0.73 +0.6 4,773,084 + -1.7 4,773,098 + -0.3 4,773,098 + +1.4 4,773,098 + -1.1 4,773,099 - +0.2 4,773,100 + +0.4 4,773,100 + +0.7 4,773,101 - -1.1 4,773,208 - +1.0 4,773,260 - +1.0 4,773,281 + +0.2 4,773,282 - -0.9 4,773,283 + -0.1 4,773,283 + +0.4 4,773,284 - -0.1 4,773,284 - +1.0 4,773,343 + AO356_21270 0.14 +1.2 4,773,344 - AO356_21270 0.14 +1.2 4,773,344 - AO356_21270 0.14 +0.7 4,773,344 - AO356_21270 0.14 +0.3 4,773,344 - AO356_21270 0.14 +0.9 4,773,347 + AO356_21270 0.15 +0.4 4,773,348 - AO356_21270 0.16 -0.0 4,773,507 + AO356_21270 0.67 -0.7 4,773,507 + AO356_21270 0.67 +0.8 4,773,507 + AO356_21270 0.67 -0.3 4,773,508 - AO356_21270 0.67 +0.9 4,773,508 - AO356_21270 0.67 -0.6 4,773,508 - AO356_21270 0.67 -0.6 4,773,513 + AO356_21270 0.69 +0.8 4,773,513 + AO356_21270 0.69 +1.0 4,773,513 + AO356_21270 0.69 +0.3 4,773,514 - AO356_21270 0.69 -0.4 4,773,603 - +0.5 4,773,607 - +1.1 4,773,607 - +0.3 4,773,607 - -0.4 4,773,607 - +0.2 4,773,824 - AO356_21275 0.69 -0.4 4,773,824 - AO356_21275 0.69 -0.6 4,773,824 - AO356_21275 0.69 -0.3 4,773,908 - +1.4 4,773,908 - +1.6 4,774,030 + AO356_21280 0.17 +1.0 4,774,031 - AO356_21280 0.17 +0.4 4,774,051 + AO356_21280 0.20 -0.6 4,774,051 + AO356_21280 0.20 +0.4 4,774,051 + AO356_21280 0.20 -0.9
Or see this region's nucleotide sequence