Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_20205

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_20195 and AO356_20200 are separated by 49 nucleotidesAO356_20200 and AO356_20205 are separated by 11 nucleotidesAO356_20205 and AO356_20210 are separated by 384 nucleotides AO356_20195: AO356_20195 - DNA polymerase III subunit delta', at 4,516,641 to 4,517,627 _20195 AO356_20200: AO356_20200 - pilus assembly protein PilZ, at 4,517,677 to 4,518,033 _20200 AO356_20205: AO356_20205 - hydrolase TatD, at 4,518,045 to 4,518,839 _20205 AO356_20210: AO356_20210 - TetR family transcriptional regulator, at 4,519,224 to 4,519,862 _20210 Position (kb) 4518 4519Strain fitness (log2 ratio) -2 -1 0 1 2at 4517.643 kb on + strandat 4517.643 kb on + strandat 4517.643 kb on + strandat 4517.643 kb on + strandat 4517.643 kb on + strandat 4517.644 kb on - strandat 4517.646 kb on + strandat 4517.647 kb on - strandat 4517.647 kb on - strandat 4517.647 kb on - strandat 4517.749 kb on + strand, within AO356_20200at 4517.750 kb on - strand, within AO356_20200at 4517.750 kb on - strand, within AO356_20200at 4517.758 kb on + strand, within AO356_20200at 4517.758 kb on + strand, within AO356_20200at 4517.758 kb on + strand, within AO356_20200at 4517.758 kb on + strand, within AO356_20200at 4517.758 kb on + strand, within AO356_20200at 4517.758 kb on + strand, within AO356_20200at 4517.759 kb on - strand, within AO356_20200at 4517.759 kb on - strand, within AO356_20200at 4517.759 kb on - strand, within AO356_20200at 4517.759 kb on - strand, within AO356_20200at 4517.759 kb on - strand, within AO356_20200at 4517.759 kb on - strand, within AO356_20200at 4517.759 kb on - strand, within AO356_20200at 4517.934 kb on - strand, within AO356_20200at 4518.024 kb on + strandat 4518.024 kb on + strandat 4518.024 kb on + strandat 4518.024 kb on + strandat 4518.025 kb on - strandat 4518.031 kb on + strandat 4518.031 kb on + strandat 4518.031 kb on + strandat 4518.031 kb on + strandat 4518.031 kb on + strandat 4518.031 kb on + strandat 4518.032 kb on - strandat 4518.032 kb on - strandat 4518.032 kb on - strandat 4518.044 kb on + strandat 4518.044 kb on + strandat 4518.044 kb on + strandat 4518.044 kb on + strandat 4518.044 kb on + strandat 4518.044 kb on + strandat 4518.045 kb on - strandat 4518.045 kb on - strandat 4518.045 kb on - strandat 4518.045 kb on - strandat 4518.045 kb on - strandat 4518.052 kb on + strandat 4518.052 kb on + strandat 4518.053 kb on - strandat 4518.053 kb on - strandat 4518.211 kb on - strand, within AO356_20205at 4518.342 kb on + strand, within AO356_20205at 4518.343 kb on - strand, within AO356_20205at 4518.349 kb on - strand, within AO356_20205at 4518.349 kb on - strand, within AO356_20205at 4518.349 kb on - strand, within AO356_20205at 4518.349 kb on - strand, within AO356_20205at 4518.558 kb on + strand, within AO356_20205at 4518.559 kb on - strand, within AO356_20205at 4518.559 kb on - strand, within AO356_20205at 4518.559 kb on - strand, within AO356_20205at 4518.559 kb on - strand, within AO356_20205at 4518.559 kb on - strand, within AO356_20205at 4518.561 kb on + strand, within AO356_20205at 4518.561 kb on + strand, within AO356_20205at 4518.561 kb on + strand, within AO356_20205at 4518.561 kb on + strand, within AO356_20205at 4518.561 kb on + strand, within AO356_20205at 4518.561 kb on + strand, within AO356_20205at 4518.561 kb on + strand, within AO356_20205at 4518.561 kb on + strand, within AO356_20205at 4518.561 kb on + strand, within AO356_20205at 4518.561 kb on + strand, within AO356_20205at 4518.562 kb on - strand, within AO356_20205at 4518.562 kb on - strand, within AO356_20205at 4518.562 kb on - strand, within AO356_20205at 4518.562 kb on - strand, within AO356_20205at 4518.562 kb on - strand, within AO356_20205at 4518.562 kb on - strand, within AO356_20205at 4518.667 kb on - strand, within AO356_20205at 4518.711 kb on + strand, within AO356_20205at 4518.711 kb on + strand, within AO356_20205at 4518.711 kb on + strand, within AO356_20205at 4518.711 kb on + strand, within AO356_20205at 4518.712 kb on - strand, within AO356_20205at 4518.712 kb on - strand, within AO356_20205at 4518.712 kb on - strand, within AO356_20205at 4518.712 kb on - strand, within AO356_20205at 4518.712 kb on - strand, within AO356_20205at 4518.716 kb on - strand, within AO356_20205at 4518.760 kb on - strandat 4518.893 kb on + strandat 4518.899 kb on + strandat 4518.900 kb on - strandat 4518.900 kb on - strandat 4518.900 kb on - strandat 4518.900 kb on - strandat 4518.926 kb on - strandat 4518.926 kb on - strandat 4518.931 kb on + strandat 4518.975 kb on + strandat 4518.975 kb on + strandat 4518.975 kb on + strandat 4518.976 kb on - strandat 4518.985 kb on + strandat 4518.985 kb on + strandat 4518.986 kb on - strandat 4519.035 kb on + strandat 4519.114 kb on + strandat 4519.118 kb on + strandat 4519.119 kb on - strandat 4519.119 kb on - strandat 4519.176 kb on + strandat 4519.177 kb on - strandat 4519.182 kb on + strandat 4519.241 kb on + strandat 4519.374 kb on + strand, within AO356_20210at 4519.374 kb on + strand, within AO356_20210at 4519.375 kb on - strand, within AO356_20210at 4519.375 kb on - strand, within AO356_20210at 4519.375 kb on - strand, within AO356_20210at 4519.375 kb on - strand, within AO356_20210at 4519.404 kb on + strand, within AO356_20210at 4519.404 kb on + strand, within AO356_20210at 4519.404 kb on + strand, within AO356_20210at 4519.404 kb on + strand, within AO356_20210at 4519.404 kb on + strand, within AO356_20210at 4519.404 kb on + strand, within AO356_20210at 4519.405 kb on - strand, within AO356_20210at 4519.405 kb on - strand, within AO356_20210at 4519.425 kb on + strand, within AO356_20210at 4519.426 kb on - strand, within AO356_20210at 4519.497 kb on + strand, within AO356_20210at 4519.498 kb on - strand, within AO356_20210at 4519.690 kb on - strand, within AO356_20210at 4519.690 kb on - strand, within AO356_20210at 4519.690 kb on - strand, within AO356_20210at 4519.699 kb on - strand, within AO356_20210at 4519.740 kb on + strand, within AO356_20210at 4519.740 kb on + strand, within AO356_20210at 4519.740 kb on + strand, within AO356_20210

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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4,517,643 + -0.8
4,517,643 + +0.6
4,517,643 + -0.4
4,517,643 + +0.8
4,517,643 + +0.1
4,517,644 - +0.3
4,517,646 + -0.0
4,517,647 - +1.2
4,517,647 - -0.2
4,517,647 - +1.5
4,517,749 + AO356_20200 0.20 -0.8
4,517,750 - AO356_20200 0.20 -2.1
4,517,750 - AO356_20200 0.20 +0.0
4,517,758 + AO356_20200 0.23 -1.7
4,517,758 + AO356_20200 0.23 +1.2
4,517,758 + AO356_20200 0.23 +0.3
4,517,758 + AO356_20200 0.23 +1.7
4,517,758 + AO356_20200 0.23 +1.1
4,517,758 + AO356_20200 0.23 -0.7
4,517,759 - AO356_20200 0.23 -1.9
4,517,759 - AO356_20200 0.23 +0.0
4,517,759 - AO356_20200 0.23 +0.7
4,517,759 - AO356_20200 0.23 +0.4
4,517,759 - AO356_20200 0.23 -0.6
4,517,759 - AO356_20200 0.23 +0.3
4,517,759 - AO356_20200 0.23 +1.2
4,517,934 - AO356_20200 0.72 -1.2
4,518,024 + -1.6
4,518,024 + -0.1
4,518,024 + +0.5
4,518,024 + +2.2
4,518,025 - +0.4
4,518,031 + +0.1
4,518,031 + +0.6
4,518,031 + -0.1
4,518,031 + +0.3
4,518,031 + -0.4
4,518,031 + -0.5
4,518,032 - -0.1
4,518,032 - +1.2
4,518,032 - +1.0
4,518,044 + +0.2
4,518,044 + +0.7
4,518,044 + -0.2
4,518,044 + +1.1
4,518,044 + -0.0
4,518,044 + +0.9
4,518,045 - +0.6
4,518,045 - -0.3
4,518,045 - +0.9
4,518,045 - +0.3
4,518,045 - +0.0
4,518,052 + +0.2
4,518,052 + +0.1
4,518,053 - +0.6
4,518,053 - -1.4
4,518,211 - AO356_20205 0.21 -0.3
4,518,342 + AO356_20205 0.37 +0.0
4,518,343 - AO356_20205 0.37 -0.2
4,518,349 - AO356_20205 0.38 -1.1
4,518,349 - AO356_20205 0.38 +0.7
4,518,349 - AO356_20205 0.38 +1.0
4,518,349 - AO356_20205 0.38 -0.5
4,518,558 + AO356_20205 0.65 +1.6
4,518,559 - AO356_20205 0.65 +0.7
4,518,559 - AO356_20205 0.65 -0.6
4,518,559 - AO356_20205 0.65 +0.3
4,518,559 - AO356_20205 0.65 +0.6
4,518,559 - AO356_20205 0.65 -0.2
4,518,561 + AO356_20205 0.65 +0.4
4,518,561 + AO356_20205 0.65 +0.4
4,518,561 + AO356_20205 0.65 -0.4
4,518,561 + AO356_20205 0.65 +0.9
4,518,561 + AO356_20205 0.65 +0.4
4,518,561 + AO356_20205 0.65 -0.0
4,518,561 + AO356_20205 0.65 +0.5
4,518,561 + AO356_20205 0.65 +0.6
4,518,561 + AO356_20205 0.65 +0.0
4,518,561 + AO356_20205 0.65 +0.6
4,518,562 - AO356_20205 0.65 +0.5
4,518,562 - AO356_20205 0.65 +0.2
4,518,562 - AO356_20205 0.65 -0.3
4,518,562 - AO356_20205 0.65 +0.7
4,518,562 - AO356_20205 0.65 -0.3
4,518,562 - AO356_20205 0.65 -0.8
4,518,667 - AO356_20205 0.78 +0.2
4,518,711 + AO356_20205 0.84 -0.1
4,518,711 + AO356_20205 0.84 -0.2
4,518,711 + AO356_20205 0.84 -0.9
4,518,711 + AO356_20205 0.84 -0.2
4,518,712 - AO356_20205 0.84 -1.7
4,518,712 - AO356_20205 0.84 -0.3
4,518,712 - AO356_20205 0.84 -0.7
4,518,712 - AO356_20205 0.84 -0.0
4,518,712 - AO356_20205 0.84 +0.4
4,518,716 - AO356_20205 0.84 -0.2
4,518,760 - +1.0
4,518,893 + -0.3
4,518,899 + +1.0
4,518,900 - +0.2
4,518,900 - -0.2
4,518,900 - -0.6
4,518,900 - -0.2
4,518,926 - +0.7
4,518,926 - -1.1
4,518,931 + +0.6
4,518,975 + +0.2
4,518,975 + -2.1
4,518,975 + +0.4
4,518,976 - +1.1
4,518,985 + -1.2
4,518,985 + -0.5
4,518,986 - -1.2
4,519,035 + -1.3
4,519,114 + +0.2
4,519,118 + -0.9
4,519,119 - -0.7
4,519,119 - +2.0
4,519,176 + -0.3
4,519,177 - +0.6
4,519,182 + +0.6
4,519,241 + +0.4
4,519,374 + AO356_20210 0.23 +0.2
4,519,374 + AO356_20210 0.23 +0.5
4,519,375 - AO356_20210 0.24 -0.7
4,519,375 - AO356_20210 0.24 +0.2
4,519,375 - AO356_20210 0.24 +0.9
4,519,375 - AO356_20210 0.24 -0.6
4,519,404 + AO356_20210 0.28 +0.2
4,519,404 + AO356_20210 0.28 +0.1
4,519,404 + AO356_20210 0.28 -1.5
4,519,404 + AO356_20210 0.28 -1.3
4,519,404 + AO356_20210 0.28 +0.8
4,519,404 + AO356_20210 0.28 -0.0
4,519,405 - AO356_20210 0.28 -0.2
4,519,405 - AO356_20210 0.28 +0.1
4,519,425 + AO356_20210 0.31 +0.0
4,519,426 - AO356_20210 0.32 +0.6
4,519,497 + AO356_20210 0.43 +0.4
4,519,498 - AO356_20210 0.43 -1.0
4,519,690 - AO356_20210 0.73 -1.2
4,519,690 - AO356_20210 0.73 -0.4
4,519,690 - AO356_20210 0.73 +0.4
4,519,699 - AO356_20210 0.74 -0.4
4,519,740 + AO356_20210 0.81 +0.4
4,519,740 + AO356_20210 0.81 -1.3
4,519,740 + AO356_20210 0.81 -0.5

Or see this region's nucleotide sequence