Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_18445 and AO356_18450 are separated by 155 nucleotides AO356_18450 and AO356_18455 are separated by 2 nucleotides
AO356_18445: AO356_18445 - RND transporter, at 4,152,332 to 4,153,480
_18445
AO356_18450: AO356_18450 - outer membrane component of uptake system, probably for ferrous iron (from data) , at 4,153,636 to 4,154,733
_18450
AO356_18455: AO356_18455 - imelysin, at 4,154,736 to 4,155,800
_18455
Position (kb)
4153
4154
4155 Strain fitness (log2 ratio)
-2
-1
0
1 at 4152.867 kb on + strand, within AO356_18445 at 4152.867 kb on + strand, within AO356_18445 at 4152.867 kb on + strand, within AO356_18445 at 4152.867 kb on + strand, within AO356_18445 at 4152.868 kb on - strand, within AO356_18445 at 4152.868 kb on - strand, within AO356_18445 at 4152.868 kb on - strand, within AO356_18445 at 4152.868 kb on - strand, within AO356_18445 at 4152.880 kb on - strand, within AO356_18445 at 4152.880 kb on - strand, within AO356_18445 at 4153.414 kb on - strand at 4153.433 kb on + strand at 4153.433 kb on + strand at 4153.514 kb on + strand at 4153.514 kb on + strand at 4153.515 kb on - strand at 4153.515 kb on - strand at 4153.520 kb on + strand at 4153.521 kb on - strand at 4153.521 kb on - strand at 4153.521 kb on - strand at 4153.521 kb on - strand at 4153.533 kb on + strand at 4153.533 kb on + strand at 4153.534 kb on - strand at 4153.551 kb on + strand at 4153.718 kb on + strand at 4153.718 kb on + strand at 4153.721 kb on + strand at 4153.721 kb on + strand at 4153.722 kb on - strand at 4153.910 kb on + strand, within AO356_18450 at 4153.910 kb on + strand, within AO356_18450 at 4153.910 kb on + strand, within AO356_18450 at 4154.269 kb on + strand, within AO356_18450 at 4154.269 kb on + strand, within AO356_18450 at 4154.270 kb on - strand, within AO356_18450 at 4154.270 kb on - strand, within AO356_18450 at 4154.270 kb on - strand, within AO356_18450 at 4154.270 kb on - strand, within AO356_18450 at 4154.270 kb on - strand, within AO356_18450 at 4154.309 kb on + strand, within AO356_18450 at 4154.360 kb on + strand, within AO356_18450 at 4154.360 kb on + strand, within AO356_18450 at 4154.360 kb on + strand, within AO356_18450 at 4154.360 kb on + strand, within AO356_18450 at 4154.361 kb on - strand, within AO356_18450 at 4154.399 kb on + strand, within AO356_18450 at 4154.399 kb on + strand, within AO356_18450 at 4154.400 kb on - strand, within AO356_18450 at 4154.465 kb on + strand, within AO356_18450 at 4154.465 kb on + strand, within AO356_18450 at 4154.465 kb on + strand, within AO356_18450 at 4154.465 kb on + strand, within AO356_18450 at 4154.466 kb on - strand, within AO356_18450 at 4154.597 kb on + strand, within AO356_18450 at 4154.598 kb on - strand, within AO356_18450 at 4154.830 kb on + strand at 4154.830 kb on + strand at 4154.831 kb on - strand at 4154.923 kb on + strand, within AO356_18455 at 4155.090 kb on + strand, within AO356_18455 at 4155.090 kb on + strand, within AO356_18455 at 4155.090 kb on + strand, within AO356_18455 at 4155.091 kb on - strand, within AO356_18455 at 4155.319 kb on + strand, within AO356_18455 at 4155.320 kb on - strand, within AO356_18455 at 4155.320 kb on - strand, within AO356_18455 at 4155.320 kb on - strand, within AO356_18455 at 4155.373 kb on + strand, within AO356_18455 at 4155.373 kb on + strand, within AO356_18455 at 4155.373 kb on + strand, within AO356_18455 at 4155.373 kb on + strand, within AO356_18455 at 4155.373 kb on + strand, within AO356_18455 at 4155.373 kb on + strand, within AO356_18455 at 4155.374 kb on - strand, within AO356_18455 at 4155.396 kb on + strand, within AO356_18455 at 4155.679 kb on + strand, within AO356_18455 at 4155.679 kb on + strand, within AO356_18455 at 4155.680 kb on - strand, within AO356_18455 at 4155.680 kb on - strand, within AO356_18455
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 4,152,867 + AO356_18445 0.47 +0.2 4,152,867 + AO356_18445 0.47 -0.0 4,152,867 + AO356_18445 0.47 +0.2 4,152,867 + AO356_18445 0.47 -0.3 4,152,868 - AO356_18445 0.47 -0.7 4,152,868 - AO356_18445 0.47 +0.3 4,152,868 - AO356_18445 0.47 -0.1 4,152,868 - AO356_18445 0.47 +0.4 4,152,880 - AO356_18445 0.48 -0.6 4,152,880 - AO356_18445 0.48 +0.3 4,153,414 - +0.1 4,153,433 + -0.8 4,153,433 + -0.7 4,153,514 + -1.1 4,153,514 + +0.3 4,153,515 - -0.0 4,153,515 - -0.1 4,153,520 + +0.9 4,153,521 - +0.2 4,153,521 - +0.0 4,153,521 - -1.4 4,153,521 - -0.1 4,153,533 + -1.1 4,153,533 + -0.5 4,153,534 - -0.1 4,153,551 + +1.0 4,153,718 + +1.5 4,153,718 + +1.1 4,153,721 + -1.0 4,153,721 + +0.0 4,153,722 - +0.0 4,153,910 + AO356_18450 0.25 -0.7 4,153,910 + AO356_18450 0.25 -2.6 4,153,910 + AO356_18450 0.25 +0.3 4,154,269 + AO356_18450 0.58 +0.7 4,154,269 + AO356_18450 0.58 +0.1 4,154,270 - AO356_18450 0.58 -0.8 4,154,270 - AO356_18450 0.58 -0.9 4,154,270 - AO356_18450 0.58 +0.4 4,154,270 - AO356_18450 0.58 -1.3 4,154,270 - AO356_18450 0.58 -1.0 4,154,309 + AO356_18450 0.61 -0.6 4,154,360 + AO356_18450 0.66 -1.0 4,154,360 + AO356_18450 0.66 +0.3 4,154,360 + AO356_18450 0.66 +0.6 4,154,360 + AO356_18450 0.66 +0.1 4,154,361 - AO356_18450 0.66 -0.4 4,154,399 + AO356_18450 0.69 +0.1 4,154,399 + AO356_18450 0.69 +1.7 4,154,400 - AO356_18450 0.70 +0.8 4,154,465 + AO356_18450 0.76 +0.8 4,154,465 + AO356_18450 0.76 -0.2 4,154,465 + AO356_18450 0.76 -0.4 4,154,465 + AO356_18450 0.76 +1.1 4,154,466 - AO356_18450 0.76 +0.7 4,154,597 + AO356_18450 0.88 +0.8 4,154,598 - AO356_18450 0.88 +1.0 4,154,830 + +1.0 4,154,830 + -0.1 4,154,831 - +0.5 4,154,923 + AO356_18455 0.18 -1.0 4,155,090 + AO356_18455 0.33 -0.1 4,155,090 + AO356_18455 0.33 +0.2 4,155,090 + AO356_18455 0.33 +1.4 4,155,091 - AO356_18455 0.33 +1.2 4,155,319 + AO356_18455 0.55 -0.1 4,155,320 - AO356_18455 0.55 -1.1 4,155,320 - AO356_18455 0.55 +0.2 4,155,320 - AO356_18455 0.55 +0.8 4,155,373 + AO356_18455 0.60 -0.3 4,155,373 + AO356_18455 0.60 -1.1 4,155,373 + AO356_18455 0.60 +1.0 4,155,373 + AO356_18455 0.60 +1.0 4,155,373 + AO356_18455 0.60 -1.8 4,155,373 + AO356_18455 0.60 +1.6 4,155,374 - AO356_18455 0.60 +0.5 4,155,396 + AO356_18455 0.62 +1.5 4,155,679 + AO356_18455 0.89 +1.5 4,155,679 + AO356_18455 0.89 +0.8 4,155,680 - AO356_18455 0.89 +0.6 4,155,680 - AO356_18455 0.89 +0.2
Or see this region's nucleotide sequence