Experiment: LB, 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03234 and SMc03235 are separated by 35 nucleotides SMc03235 and SMc03236 are separated by 2 nucleotides SMc03236 and SMc03237 are separated by 177 nucleotides
SMc03234: SMc03234 - hypothetical protein, at 3,342,722 to 3,344,359
SMc03234
SMc03235: SMc03235 - hypothetical protein, at 3,344,395 to 3,344,874
SMc03235
SMc03236: SMc03236 - glutamine amidotransferase, at 3,344,877 to 3,345,635
SMc03236
SMc03237: SMc03237 - transport transmembrane protein, at 3,345,813 to 3,347,060
SMc03237
Position (kb)
3344
3345
3346 Strain fitness (log2 ratio)
-2
-1
0
1 at 3344.375 kb on + strand at 3344.375 kb on + strand at 3344.563 kb on + strand, within SMc03235 at 3344.563 kb on + strand, within SMc03235 at 3344.563 kb on + strand, within SMc03235 at 3344.564 kb on - strand, within SMc03235 at 3344.564 kb on - strand, within SMc03235 at 3344.639 kb on - strand, within SMc03235 at 3344.657 kb on + strand, within SMc03235 at 3344.658 kb on - strand, within SMc03235 at 3345.309 kb on + strand, within SMc03236 at 3345.309 kb on + strand, within SMc03236 at 3345.375 kb on + strand, within SMc03236 at 3346.002 kb on + strand, within SMc03237 at 3346.002 kb on + strand, within SMc03237 at 3346.020 kb on + strand, within SMc03237 at 3346.062 kb on + strand, within SMc03237 at 3346.063 kb on - strand, within SMc03237 at 3346.063 kb on - strand, within SMc03237 at 3346.076 kb on - strand, within SMc03237 at 3346.195 kb on + strand, within SMc03237 at 3346.195 kb on + strand, within SMc03237 at 3346.195 kb on + strand, within SMc03237 at 3346.411 kb on + strand, within SMc03237 at 3346.412 kb on - strand, within SMc03237
Per-strain Table
Position Strand Gene LocusTag Fraction LB, 30C remove 3,344,375 + -0.2 3,344,375 + -1.9 3,344,563 + SMc03235 0.35 -0.2 3,344,563 + SMc03235 0.35 -0.4 3,344,563 + SMc03235 0.35 +0.3 3,344,564 - SMc03235 0.35 -0.3 3,344,564 - SMc03235 0.35 +0.3 3,344,639 - SMc03235 0.51 -0.2 3,344,657 + SMc03235 0.55 -0.0 3,344,658 - SMc03235 0.55 +0.2 3,345,309 + SMc03236 0.57 -0.9 3,345,309 + SMc03236 0.57 -0.4 3,345,375 + SMc03236 0.66 -0.9 3,346,002 + SMc03237 0.15 +0.1 3,346,002 + SMc03237 0.15 -0.1 3,346,020 + SMc03237 0.17 +0.2 3,346,062 + SMc03237 0.20 +0.3 3,346,063 - SMc03237 0.20 -0.1 3,346,063 - SMc03237 0.20 -0.6 3,346,076 - SMc03237 0.21 +0.2 3,346,195 + SMc03237 0.31 +0.0 3,346,195 + SMc03237 0.31 -0.2 3,346,195 + SMc03237 0.31 +0.1 3,346,411 + SMc03237 0.48 +0.4 3,346,412 - SMc03237 0.48 -1.0
Or see this region's nucleotide sequence