Experiment: LB, 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03129 and SMc03128 are separated by 12 nucleotides SMc03128 and SMc03127 are separated by 17 nucleotides SMc03127 and SMc03126 overlap by 4 nucleotides SMc03126 and SMc03125 overlap by 4 nucleotides
SMc03129: SMc03129 - hypothetical protein, at 3,200,446 to 3,201,213
SMc03129
SMc03128: SMc03128 - ABC transporter permease, at 3,201,226 to 3,202,107
SMc03128
SMc03127: SMc03127 - ABC transporter permease, at 3,202,125 to 3,203,051
SMc03127
SMc03126: SMc03126 - transport system ATP-binding ABC transporter protein, at 3,203,048 to 3,204,046
SMc03126
SMc03125: SMc03125 - transport system ATP-binding ABC transporter protein, at 3,204,043 to 3,205,056
SMc03125
Position (kb)
3202
3203
3204 Strain fitness (log2 ratio)
-2
-1
0
1 at 3201.344 kb on + strand, within SMc03128 at 3201.345 kb on - strand, within SMc03128 at 3201.947 kb on + strand, within SMc03128 at 3201.947 kb on + strand, within SMc03128 at 3202.127 kb on - strand at 3202.127 kb on - strand at 3202.635 kb on - strand, within SMc03127 at 3202.700 kb on - strand, within SMc03127 at 3202.852 kb on + strand, within SMc03127 at 3202.862 kb on - strand, within SMc03127 at 3203.301 kb on + strand, within SMc03126 at 3204.006 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB, 30C remove 3,201,344 + SMc03128 0.13 -1.6 3,201,345 - SMc03128 0.13 -0.8 3,201,947 + SMc03128 0.82 -1.2 3,201,947 + SMc03128 0.82 -0.8 3,202,127 - -1.0 3,202,127 - -0.1 3,202,635 - SMc03127 0.55 +0.2 3,202,700 - SMc03127 0.62 -0.5 3,202,852 + SMc03127 0.78 -1.6 3,202,862 - SMc03127 0.80 -2.1 3,203,301 + SMc03126 0.25 -1.1 3,204,006 + -1.6
Or see this region's nucleotide sequence