Experiment: LB, 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01967 and SMc01968 are separated by 216 nucleotides SMc01968 and SMc01969 are separated by 45 nucleotides
SMc01967: SMc01967 - agmatinase, at 2,689,288 to 2,690,346
SMc01967
SMc01968: SMc01968 - transcriptional regulator, at 2,690,563 to 2,691,606
SMc01968
SMc01969: SMc01969 - hypothetical protein, at 2,691,652 to 2,692,830
SMc01969
Position (kb)
2690
2691
2692 Strain fitness (log2 ratio)
-2
-1
0
1 at 2689.596 kb on + strand, within SMc01967 at 2689.646 kb on + strand, within SMc01967 at 2689.646 kb on + strand, within SMc01967 at 2689.664 kb on + strand, within SMc01967 at 2689.664 kb on + strand, within SMc01967 at 2689.665 kb on - strand, within SMc01967 at 2689.804 kb on - strand, within SMc01967 at 2690.031 kb on + strand, within SMc01967 at 2690.031 kb on + strand, within SMc01967 at 2690.031 kb on + strand, within SMc01967 at 2690.031 kb on + strand, within SMc01967 at 2690.033 kb on + strand, within SMc01967 at 2690.033 kb on + strand, within SMc01967 at 2690.034 kb on - strand, within SMc01967 at 2690.210 kb on + strand, within SMc01967 at 2690.210 kb on + strand, within SMc01967 at 2690.361 kb on + strand at 2690.362 kb on - strand at 2690.412 kb on - strand at 2690.470 kb on + strand at 2690.471 kb on - strand at 2690.471 kb on - strand at 2690.507 kb on + strand at 2690.672 kb on + strand, within SMc01968 at 2690.673 kb on - strand, within SMc01968 at 2690.673 kb on - strand, within SMc01968 at 2690.910 kb on + strand, within SMc01968 at 2690.910 kb on + strand, within SMc01968 at 2690.911 kb on - strand, within SMc01968 at 2691.001 kb on + strand, within SMc01968 at 2691.002 kb on - strand, within SMc01968 at 2691.002 kb on - strand, within SMc01968 at 2691.605 kb on - strand at 2691.605 kb on - strand at 2691.698 kb on + strand at 2691.727 kb on + strand at 2691.728 kb on - strand at 2691.728 kb on - strand at 2691.728 kb on - strand at 2691.836 kb on - strand, within SMc01969 at 2691.836 kb on - strand, within SMc01969 at 2691.836 kb on - strand, within SMc01969 at 2691.884 kb on - strand, within SMc01969 at 2691.908 kb on - strand, within SMc01969 at 2691.908 kb on - strand, within SMc01969 at 2692.024 kb on + strand, within SMc01969 at 2692.025 kb on - strand, within SMc01969 at 2692.196 kb on - strand, within SMc01969 at 2692.222 kb on + strand, within SMc01969 at 2692.270 kb on + strand, within SMc01969 at 2692.354 kb on + strand, within SMc01969
Per-strain Table
Position Strand Gene LocusTag Fraction LB, 30C remove 2,689,596 + SMc01967 0.29 +0.4 2,689,646 + SMc01967 0.34 -0.2 2,689,646 + SMc01967 0.34 -0.0 2,689,664 + SMc01967 0.36 +1.4 2,689,664 + SMc01967 0.36 +0.2 2,689,665 - SMc01967 0.36 +0.2 2,689,804 - SMc01967 0.49 +0.2 2,690,031 + SMc01967 0.70 -0.3 2,690,031 + SMc01967 0.70 -0.9 2,690,031 + SMc01967 0.70 -1.1 2,690,031 + SMc01967 0.70 -0.2 2,690,033 + SMc01967 0.70 -2.1 2,690,033 + SMc01967 0.70 +0.2 2,690,034 - SMc01967 0.70 -0.0 2,690,210 + SMc01967 0.87 -0.6 2,690,210 + SMc01967 0.87 -0.0 2,690,361 + +0.1 2,690,362 - +0.1 2,690,412 - +0.1 2,690,470 + -0.2 2,690,471 - -0.3 2,690,471 - -0.4 2,690,507 + +0.1 2,690,672 + SMc01968 0.10 -0.5 2,690,673 - SMc01968 0.11 -0.7 2,690,673 - SMc01968 0.11 -0.4 2,690,910 + SMc01968 0.33 -0.3 2,690,910 + SMc01968 0.33 -0.9 2,690,911 - SMc01968 0.33 -0.6 2,691,001 + SMc01968 0.42 -0.1 2,691,002 - SMc01968 0.42 -1.7 2,691,002 - SMc01968 0.42 -0.8 2,691,605 - -0.2 2,691,605 - -0.4 2,691,698 + -1.0 2,691,727 + -0.5 2,691,728 - -0.1 2,691,728 - -0.9 2,691,728 - -1.2 2,691,836 - SMc01969 0.16 -0.9 2,691,836 - SMc01969 0.16 -0.2 2,691,836 - SMc01969 0.16 -0.2 2,691,884 - SMc01969 0.20 -0.5 2,691,908 - SMc01969 0.22 -2.5 2,691,908 - SMc01969 0.22 -0.6 2,692,024 + SMc01969 0.32 -1.2 2,692,025 - SMc01969 0.32 -0.1 2,692,196 - SMc01969 0.46 -0.7 2,692,222 + SMc01969 0.48 -0.8 2,692,270 + SMc01969 0.52 -2.1 2,692,354 + SMc01969 0.60 -0.9
Or see this region's nucleotide sequence