Strain Fitness in Sinorhizobium meliloti 1021 around SMc01968

Experiment: LB, 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01967 and SMc01968 are separated by 216 nucleotidesSMc01968 and SMc01969 are separated by 45 nucleotides SMc01967: SMc01967 - agmatinase, at 2,689,288 to 2,690,346 SMc01967 SMc01968: SMc01968 - transcriptional regulator, at 2,690,563 to 2,691,606 SMc01968 SMc01969: SMc01969 - hypothetical protein, at 2,691,652 to 2,692,830 SMc01969 Position (kb) 2690 2691 2692Strain fitness (log2 ratio) -2 -1 0 1at 2689.596 kb on + strand, within SMc01967at 2689.646 kb on + strand, within SMc01967at 2689.646 kb on + strand, within SMc01967at 2689.664 kb on + strand, within SMc01967at 2689.664 kb on + strand, within SMc01967at 2689.665 kb on - strand, within SMc01967at 2689.804 kb on - strand, within SMc01967at 2690.031 kb on + strand, within SMc01967at 2690.031 kb on + strand, within SMc01967at 2690.031 kb on + strand, within SMc01967at 2690.031 kb on + strand, within SMc01967at 2690.033 kb on + strand, within SMc01967at 2690.033 kb on + strand, within SMc01967at 2690.034 kb on - strand, within SMc01967at 2690.210 kb on + strand, within SMc01967at 2690.210 kb on + strand, within SMc01967at 2690.361 kb on + strandat 2690.362 kb on - strandat 2690.412 kb on - strandat 2690.470 kb on + strandat 2690.471 kb on - strandat 2690.471 kb on - strandat 2690.507 kb on + strandat 2690.672 kb on + strand, within SMc01968at 2690.673 kb on - strand, within SMc01968at 2690.673 kb on - strand, within SMc01968at 2690.910 kb on + strand, within SMc01968at 2690.910 kb on + strand, within SMc01968at 2690.911 kb on - strand, within SMc01968at 2691.001 kb on + strand, within SMc01968at 2691.002 kb on - strand, within SMc01968at 2691.002 kb on - strand, within SMc01968at 2691.605 kb on - strandat 2691.605 kb on - strandat 2691.698 kb on + strandat 2691.727 kb on + strandat 2691.728 kb on - strandat 2691.728 kb on - strandat 2691.728 kb on - strandat 2691.836 kb on - strand, within SMc01969at 2691.836 kb on - strand, within SMc01969at 2691.836 kb on - strand, within SMc01969at 2691.884 kb on - strand, within SMc01969at 2691.908 kb on - strand, within SMc01969at 2691.908 kb on - strand, within SMc01969at 2692.024 kb on + strand, within SMc01969at 2692.025 kb on - strand, within SMc01969at 2692.196 kb on - strand, within SMc01969at 2692.222 kb on + strand, within SMc01969at 2692.270 kb on + strand, within SMc01969at 2692.354 kb on + strand, within SMc01969

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, 30C
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2,689,596 + SMc01967 0.29 +0.4
2,689,646 + SMc01967 0.34 -0.2
2,689,646 + SMc01967 0.34 -0.0
2,689,664 + SMc01967 0.36 +1.4
2,689,664 + SMc01967 0.36 +0.2
2,689,665 - SMc01967 0.36 +0.2
2,689,804 - SMc01967 0.49 +0.2
2,690,031 + SMc01967 0.70 -0.3
2,690,031 + SMc01967 0.70 -0.9
2,690,031 + SMc01967 0.70 -1.1
2,690,031 + SMc01967 0.70 -0.2
2,690,033 + SMc01967 0.70 -2.1
2,690,033 + SMc01967 0.70 +0.2
2,690,034 - SMc01967 0.70 -0.0
2,690,210 + SMc01967 0.87 -0.6
2,690,210 + SMc01967 0.87 -0.0
2,690,361 + +0.1
2,690,362 - +0.1
2,690,412 - +0.1
2,690,470 + -0.2
2,690,471 - -0.3
2,690,471 - -0.4
2,690,507 + +0.1
2,690,672 + SMc01968 0.10 -0.5
2,690,673 - SMc01968 0.11 -0.7
2,690,673 - SMc01968 0.11 -0.4
2,690,910 + SMc01968 0.33 -0.3
2,690,910 + SMc01968 0.33 -0.9
2,690,911 - SMc01968 0.33 -0.6
2,691,001 + SMc01968 0.42 -0.1
2,691,002 - SMc01968 0.42 -1.7
2,691,002 - SMc01968 0.42 -0.8
2,691,605 - -0.2
2,691,605 - -0.4
2,691,698 + -1.0
2,691,727 + -0.5
2,691,728 - -0.1
2,691,728 - -0.9
2,691,728 - -1.2
2,691,836 - SMc01969 0.16 -0.9
2,691,836 - SMc01969 0.16 -0.2
2,691,836 - SMc01969 0.16 -0.2
2,691,884 - SMc01969 0.20 -0.5
2,691,908 - SMc01969 0.22 -2.5
2,691,908 - SMc01969 0.22 -0.6
2,692,024 + SMc01969 0.32 -1.2
2,692,025 - SMc01969 0.32 -0.1
2,692,196 - SMc01969 0.46 -0.7
2,692,222 + SMc01969 0.48 -0.8
2,692,270 + SMc01969 0.52 -2.1
2,692,354 + SMc01969 0.60 -0.9

Or see this region's nucleotide sequence