Strain Fitness in Sinorhizobium meliloti 1021 around SMc01162

Experiment: LB, 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01163 and SMc01162 are separated by 251 nucleotidesSMc01162 and SMc01161 overlap by 9 nucleotides SMc01163: SMc01163 - oxidoreductase, at 387,088 to 388,218 SMc01163 SMc01162: SMc01162 - hypothetical protein, at 388,470 to 389,285 SMc01162 SMc01161: SMc01161 - bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase, at 389,277 to 390,482 SMc01161 Position (kb) 388 389 390Strain fitness (log2 ratio) -2 -1 0 1at 387.750 kb on + strand, within SMc01163at 387.752 kb on - strand, within SMc01163at 387.816 kb on - strand, within SMc01163at 387.912 kb on - strand, within SMc01163at 387.912 kb on - strand, within SMc01163at 388.356 kb on - strandat 388.356 kb on - strandat 388.441 kb on - strandat 388.441 kb on - strandat 388.489 kb on - strandat 388.506 kb on + strandat 388.606 kb on + strand, within SMc01162at 388.614 kb on + strand, within SMc01162at 388.615 kb on - strand, within SMc01162at 388.802 kb on + strand, within SMc01162at 389.068 kb on - strand, within SMc01162at 389.097 kb on + strand, within SMc01162at 389.097 kb on + strand, within SMc01162at 389.098 kb on - strand, within SMc01162at 389.128 kb on - strand, within SMc01162

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, 30C
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387,750 + SMc01163 0.59 -0.4
387,752 - SMc01163 0.59 +0.1
387,816 - SMc01163 0.64 +0.0
387,912 - SMc01163 0.73 -0.4
387,912 - SMc01163 0.73 -0.1
388,356 - +0.1
388,356 - +0.1
388,441 - +0.3
388,441 - -2.0
388,489 - +0.6
388,506 + +0.3
388,606 + SMc01162 0.17 +0.3
388,614 + SMc01162 0.18 -0.4
388,615 - SMc01162 0.18 +0.2
388,802 + SMc01162 0.41 +0.6
389,068 - SMc01162 0.73 +1.0
389,097 + SMc01162 0.77 +0.4
389,097 + SMc01162 0.77 +0.0
389,098 - SMc01162 0.77 +0.7
389,128 - SMc01162 0.81 -0.1

Or see this region's nucleotide sequence