Experiment: LB, 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00377 and SMc00378 are separated by 118 nucleotides SMc00378 and SMc00379 overlap by 1 nucleotides SMc00379 and SMc00380 are separated by 8 nucleotides
SMc00377: SMc00377 - hypothetical protein, at 330,891 to 331,682
SMc00377
SMc00378: SMc00378 - exodeoxyribonuclease VII large subunit, at 331,801 to 333,381
SMc00378
SMc00379: SMc00379 - oxidoreductase, at 333,381 to 333,971
SMc00379
SMc00380: SMc00380 - transcriptional regulator, at 333,980 to 334,474
SMc00380
Position (kb) 331
332
333
334 Strain fitness (log2 ratio) -2
-1
0
1 at 330.822 kb on + strand at 330.822 kb on + strand at 330.823 kb on - strand at 330.886 kb on + strand at 330.887 kb on - strand at 330.887 kb on - strand at 330.985 kb on + strand, within SMc00377 at 330.986 kb on - strand, within SMc00377 at 330.986 kb on - strand, within SMc00377 at 331.226 kb on + strand, within SMc00377 at 331.226 kb on + strand, within SMc00377 at 331.226 kb on + strand, within SMc00377 at 331.227 kb on - strand, within SMc00377 at 331.227 kb on - strand, within SMc00377 at 331.227 kb on - strand, within SMc00377 at 331.751 kb on - strand at 331.751 kb on - strand at 331.751 kb on - strand at 331.754 kb on + strand at 331.754 kb on + strand at 331.754 kb on + strand at 331.963 kb on + strand, within SMc00378 at 331.963 kb on + strand, within SMc00378 at 331.964 kb on - strand, within SMc00378 at 333.163 kb on + strand, within SMc00378 at 333.164 kb on - strand, within SMc00378 at 333.387 kb on - strand at 333.476 kb on + strand at 333.476 kb on + strand, within SMc00379 at 333.547 kb on - strand, within SMc00379 at 333.547 kb on - strand, within SMc00379 at 333.561 kb on + strand, within SMc00379 at 333.758 kb on - strand, within SMc00379 at 333.807 kb on + strand, within SMc00379 at 333.807 kb on + strand, within SMc00379 at 333.807 kb on + strand, within SMc00379 at 333.807 kb on + strand, within SMc00379 at 333.936 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB, 30C remove 330,822 + +0.0 330,822 + +0.1 330,823 - -0.6 330,886 + +0.3 330,887 - -0.2 330,887 - +0.4 330,985 + SMc00377 0.12 -0.2 330,986 - SMc00377 0.12 +0.0 330,986 - SMc00377 0.12 +0.4 331,226 + SMc00377 0.42 +0.1 331,226 + SMc00377 0.42 +1.0 331,226 + SMc00377 0.42 +0.0 331,227 - SMc00377 0.42 -0.2 331,227 - SMc00377 0.42 -0.5 331,227 - SMc00377 0.42 -0.7 331,751 - +0.5 331,751 - +0.0 331,751 - -0.4 331,754 + -0.1 331,754 + +0.2 331,754 + -0.2 331,963 + SMc00378 0.10 -0.9 331,963 + SMc00378 0.10 -0.3 331,964 - SMc00378 0.10 -0.5 333,163 + SMc00378 0.86 -0.4 333,164 - SMc00378 0.86 -1.8 333,387 - -0.1 333,476 + +1.0 333,476 + SMc00379 0.16 -0.1 333,547 - SMc00379 0.28 +0.0 333,547 - SMc00379 0.28 +0.2 333,561 + SMc00379 0.30 -1.0 333,758 - SMc00379 0.64 -0.4 333,807 + SMc00379 0.72 +0.0 333,807 + SMc00379 0.72 -0.0 333,807 + SMc00379 0.72 +1.4 333,807 + SMc00379 0.72 -0.1 333,936 - -0.1
Or see this region's nucleotide sequence