Experiment: LB, 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21114 and SM_b21115 are separated by 25 nucleotides SM_b21115 and SM_b21116 are separated by 213 nucleotides SM_b21116 and SM_b21117 are separated by 83 nucleotides SM_b21117 and SM_b21119 are separated by 250 nucleotides
SM_b21114: SM_b21114 - nitrate transport protein, at 755,267 to 756,592
_b21114
SM_b21115: SM_b21115 - response regulator protein, at 756,618 to 757,106
_b21115
SM_b21116: SM_b21116 - trifolitoxin biosynthesis protein, at 757,320 to 758,051
_b21116
SM_b21117: SM_b21117 - transcriptional regulator, at 758,135 to 758,593
_b21117
SM_b21119: SM_b21119 - gluconokinase, at 758,844 to 759,380
_b21119
Position (kb) 757
758
759 Strain fitness (log2 ratio) -1
0
1 at 756.569 kb on + strand at 756.569 kb on + strand at 756.569 kb on + strand at 756.569 kb on + strand at 756.753 kb on - strand, within SM_b21115 at 757.041 kb on + strand, within SM_b21115 at 757.041 kb on + strand, within SM_b21115 at 757.151 kb on + strand at 757.151 kb on + strand at 757.152 kb on - strand at 757.214 kb on - strand at 757.567 kb on + strand, within SM_b21116 at 757.567 kb on + strand, within SM_b21116 at 757.567 kb on + strand, within SM_b21116 at 757.749 kb on + strand, within SM_b21116 at 757.749 kb on + strand, within SM_b21116 at 757.749 kb on + strand, within SM_b21116 at 757.750 kb on - strand, within SM_b21116 at 757.750 kb on - strand, within SM_b21116 at 757.750 kb on - strand, within SM_b21116 at 757.750 kb on - strand, within SM_b21116 at 757.753 kb on + strand, within SM_b21116 at 757.754 kb on - strand, within SM_b21116 at 757.754 kb on - strand, within SM_b21116 at 757.754 kb on - strand, within SM_b21116 at 757.754 kb on - strand, within SM_b21116 at 757.812 kb on + strand, within SM_b21116 at 758.118 kb on + strand at 758.118 kb on + strand at 758.118 kb on + strand at 758.119 kb on - strand at 758.119 kb on - strand at 758.119 kb on - strand at 758.119 kb on - strand at 758.119 kb on - strand at 758.119 kb on - strand at 758.119 kb on - strand at 758.119 kb on - strand at 758.119 kb on - strand at 758.405 kb on + strand, within SM_b21117 at 758.405 kb on + strand, within SM_b21117 at 758.406 kb on - strand, within SM_b21117 at 758.406 kb on - strand, within SM_b21117 at 758.406 kb on - strand, within SM_b21117 at 758.406 kb on - strand, within SM_b21117 at 758.406 kb on - strand, within SM_b21117 at 758.522 kb on + strand, within SM_b21117 at 758.522 kb on + strand, within SM_b21117 at 758.522 kb on + strand, within SM_b21117 at 758.523 kb on - strand, within SM_b21117 at 758.523 kb on - strand, within SM_b21117 at 758.576 kb on - strand at 758.598 kb on + strand at 758.599 kb on - strand at 758.599 kb on - strand at 758.625 kb on + strand at 758.625 kb on + strand at 758.626 kb on - strand at 758.632 kb on + strand at 758.634 kb on + strand at 758.634 kb on + strand at 758.635 kb on - strand at 758.706 kb on + strand at 758.849 kb on + strand at 758.849 kb on + strand at 758.850 kb on - strand at 758.850 kb on - strand at 758.857 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB, 30C remove 756,569 + -1.6 756,569 + -0.1 756,569 + -0.6 756,569 + -0.2 756,753 - SM_b21115 0.28 -0.3 757,041 + SM_b21115 0.87 +0.3 757,041 + SM_b21115 0.87 -0.2 757,151 + +0.3 757,151 + -0.3 757,152 - +1.1 757,214 - +0.3 757,567 + SM_b21116 0.34 +0.3 757,567 + SM_b21116 0.34 +0.6 757,567 + SM_b21116 0.34 +0.8 757,749 + SM_b21116 0.59 +0.4 757,749 + SM_b21116 0.59 -0.3 757,749 + SM_b21116 0.59 -0.5 757,750 - SM_b21116 0.59 -0.0 757,750 - SM_b21116 0.59 +0.3 757,750 - SM_b21116 0.59 +0.3 757,750 - SM_b21116 0.59 +0.5 757,753 + SM_b21116 0.59 +0.3 757,754 - SM_b21116 0.59 +0.3 757,754 - SM_b21116 0.59 +0.2 757,754 - SM_b21116 0.59 +0.6 757,754 - SM_b21116 0.59 -0.7 757,812 + SM_b21116 0.67 +0.1 758,118 + -0.4 758,118 + -0.1 758,118 + -1.1 758,119 - -0.1 758,119 - -0.2 758,119 - +0.5 758,119 - +0.0 758,119 - -0.8 758,119 - +0.3 758,119 - -0.5 758,119 - +0.2 758,119 - +0.6 758,405 + SM_b21117 0.59 -0.5 758,405 + SM_b21117 0.59 +0.0 758,406 - SM_b21117 0.59 +0.4 758,406 - SM_b21117 0.59 -0.5 758,406 - SM_b21117 0.59 +0.5 758,406 - SM_b21117 0.59 +0.3 758,406 - SM_b21117 0.59 +0.2 758,522 + SM_b21117 0.84 +0.1 758,522 + SM_b21117 0.84 +0.5 758,522 + SM_b21117 0.84 +0.1 758,523 - SM_b21117 0.85 +0.6 758,523 - SM_b21117 0.85 -0.1 758,576 - +0.6 758,598 + -0.5 758,599 - +0.7 758,599 - -0.7 758,625 + -0.6 758,625 + +0.3 758,626 - +0.9 758,632 + -0.3 758,634 + -0.1 758,634 + -0.0 758,635 - +0.0 758,706 + +0.1 758,849 + -0.8 758,849 + -0.4 758,850 - +0.3 758,850 - +0.3 758,857 - -0.8
Or see this region's nucleotide sequence