Experiment: LB, 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20495 and SM_b20496 are separated by 432 nucleotides SM_b20496 and SM_b20497 are separated by 8 nucleotides
SM_b20495: SM_b20495 - hypothetical protein, at 513,218 to 514,921
_b20495
SM_b20496: SM_b20496 - GMC oxidoreductase, at 515,354 to 516,964
_b20496
SM_b20497: SM_b20497 - L-xylulose kinase, at 516,973 to 518,502
_b20497
Position (kb) 515
516
517 Strain fitness (log2 ratio) -1
0
1 at 514.418 kb on + strand, within SM_b20495 at 514.418 kb on - strand, within SM_b20495 at 514.420 kb on + strand, within SM_b20495 at 514.421 kb on - strand, within SM_b20495 at 514.664 kb on + strand, within SM_b20495 at 514.664 kb on + strand, within SM_b20495 at 514.664 kb on + strand, within SM_b20495 at 514.664 kb on + strand, within SM_b20495 at 514.664 kb on + strand, within SM_b20495 at 514.664 kb on + strand, within SM_b20495 at 514.664 kb on + strand, within SM_b20495 at 514.665 kb on - strand, within SM_b20495 at 514.665 kb on - strand, within SM_b20495 at 514.665 kb on - strand, within SM_b20495 at 514.667 kb on - strand, within SM_b20495 at 514.667 kb on - strand, within SM_b20495 at 514.667 kb on - strand, within SM_b20495 at 514.667 kb on - strand, within SM_b20495 at 514.667 kb on - strand, within SM_b20495 at 514.688 kb on + strand, within SM_b20495 at 514.689 kb on - strand, within SM_b20495 at 514.741 kb on + strand, within SM_b20495 at 514.810 kb on - strand at 514.820 kb on + strand at 514.885 kb on - strand at 514.885 kb on - strand at 515.144 kb on + strand at 515.145 kb on - strand at 515.356 kb on - strand at 515.718 kb on + strand, within SM_b20496 at 515.719 kb on - strand, within SM_b20496 at 515.719 kb on - strand, within SM_b20496 at 515.719 kb on - strand, within SM_b20496 at 515.823 kb on + strand, within SM_b20496 at 515.875 kb on - strand, within SM_b20496 at 515.875 kb on - strand, within SM_b20496 at 515.875 kb on - strand, within SM_b20496 at 515.875 kb on - strand, within SM_b20496 at 515.918 kb on + strand, within SM_b20496 at 515.919 kb on - strand, within SM_b20496 at 515.970 kb on + strand, within SM_b20496 at 516.010 kb on - strand, within SM_b20496 at 516.010 kb on - strand, within SM_b20496 at 516.010 kb on - strand, within SM_b20496 at 516.010 kb on - strand, within SM_b20496 at 516.010 kb on - strand, within SM_b20496 at 516.156 kb on - strand, within SM_b20496 at 516.386 kb on + strand, within SM_b20496 at 516.636 kb on + strand at 516.659 kb on - strand, within SM_b20496 at 516.659 kb on - strand, within SM_b20496 at 516.659 kb on - strand, within SM_b20496 at 516.659 kb on - strand, within SM_b20496 at 516.660 kb on + strand, within SM_b20496 at 516.660 kb on + strand, within SM_b20496 at 516.660 kb on + strand, within SM_b20496 at 516.661 kb on - strand, within SM_b20496 at 516.661 kb on - strand, within SM_b20496 at 516.661 kb on - strand, within SM_b20496 at 516.661 kb on - strand, within SM_b20496 at 516.790 kb on - strand, within SM_b20496 at 517.055 kb on + strand at 517.056 kb on - strand at 517.056 kb on - strand at 517.065 kb on - strand at 517.069 kb on - strand at 517.069 kb on - strand at 517.076 kb on + strand at 517.076 kb on + strand at 517.077 kb on - strand at 517.077 kb on - strand at 517.267 kb on + strand, within SM_b20497 at 517.421 kb on + strand, within SM_b20497 at 517.421 kb on + strand, within SM_b20497 at 517.422 kb on - strand, within SM_b20497 at 517.422 kb on - strand, within SM_b20497 at 517.422 kb on - strand, within SM_b20497 at 517.466 kb on + strand, within SM_b20497 at 517.475 kb on + strand, within SM_b20497 at 517.475 kb on + strand, within SM_b20497 at 517.475 kb on + strand, within SM_b20497 at 517.475 kb on + strand, within SM_b20497 at 517.475 kb on + strand, within SM_b20497 at 517.475 kb on + strand, within SM_b20497 at 517.476 kb on - strand, within SM_b20497 at 517.476 kb on - strand, within SM_b20497 at 517.628 kb on + strand, within SM_b20497
Per-strain Table
Position Strand Gene LocusTag Fraction LB, 30C remove 514,418 + SM_b20495 0.70 -0.1 514,418 - SM_b20495 0.70 -0.8 514,420 + SM_b20495 0.71 +0.5 514,421 - SM_b20495 0.71 -0.3 514,664 + SM_b20495 0.85 +0.3 514,664 + SM_b20495 0.85 -0.1 514,664 + SM_b20495 0.85 +0.2 514,664 + SM_b20495 0.85 -0.8 514,664 + SM_b20495 0.85 +0.0 514,664 + SM_b20495 0.85 -1.3 514,664 + SM_b20495 0.85 -0.2 514,665 - SM_b20495 0.85 -0.1 514,665 - SM_b20495 0.85 +0.1 514,665 - SM_b20495 0.85 +0.0 514,667 - SM_b20495 0.85 +0.6 514,667 - SM_b20495 0.85 +0.1 514,667 - SM_b20495 0.85 -1.5 514,667 - SM_b20495 0.85 +0.4 514,667 - SM_b20495 0.85 +0.3 514,688 + SM_b20495 0.86 +0.1 514,689 - SM_b20495 0.86 -0.1 514,741 + SM_b20495 0.89 -0.5 514,810 - -0.7 514,820 + -0.1 514,885 - +1.5 514,885 - -1.2 515,144 + -0.7 515,145 - +0.0 515,356 - +0.6 515,718 + SM_b20496 0.23 -0.0 515,719 - SM_b20496 0.23 -0.1 515,719 - SM_b20496 0.23 -0.0 515,719 - SM_b20496 0.23 -0.2 515,823 + SM_b20496 0.29 -0.8 515,875 - SM_b20496 0.32 +0.7 515,875 - SM_b20496 0.32 +0.3 515,875 - SM_b20496 0.32 +0.4 515,875 - SM_b20496 0.32 +0.5 515,918 + SM_b20496 0.35 +0.9 515,919 - SM_b20496 0.35 -0.1 515,970 + SM_b20496 0.38 +0.9 516,010 - SM_b20496 0.41 +0.6 516,010 - SM_b20496 0.41 -0.2 516,010 - SM_b20496 0.41 -0.0 516,010 - SM_b20496 0.41 +0.6 516,010 - SM_b20496 0.41 -0.2 516,156 - SM_b20496 0.50 +0.0 516,386 + SM_b20496 0.64 +1.1 516,636 + +1.1 516,659 - SM_b20496 0.81 +0.7 516,659 - SM_b20496 0.81 +0.6 516,659 - SM_b20496 0.81 -0.4 516,659 - SM_b20496 0.81 -0.4 516,660 + SM_b20496 0.81 -0.1 516,660 + SM_b20496 0.81 -0.8 516,660 + SM_b20496 0.81 -0.1 516,661 - SM_b20496 0.81 -0.4 516,661 - SM_b20496 0.81 -0.1 516,661 - SM_b20496 0.81 -0.1 516,661 - SM_b20496 0.81 +1.7 516,790 - SM_b20496 0.89 +1.2 517,055 + +0.2 517,056 - +0.3 517,056 - -1.1 517,065 - +0.2 517,069 - -0.4 517,069 - +0.1 517,076 + -0.7 517,076 + +0.1 517,077 - -0.3 517,077 - -0.3 517,267 + SM_b20497 0.19 +0.2 517,421 + SM_b20497 0.29 -0.7 517,421 + SM_b20497 0.29 +0.3 517,422 - SM_b20497 0.29 +0.3 517,422 - SM_b20497 0.29 +0.1 517,422 - SM_b20497 0.29 +0.2 517,466 + SM_b20497 0.32 -1.2 517,475 + SM_b20497 0.33 -0.6 517,475 + SM_b20497 0.33 +0.1 517,475 + SM_b20497 0.33 -0.5 517,475 + SM_b20497 0.33 +1.0 517,475 + SM_b20497 0.33 -0.8 517,475 + SM_b20497 0.33 -0.1 517,476 - SM_b20497 0.33 -0.3 517,476 - SM_b20497 0.33 +0.1 517,628 + SM_b20497 0.43 +0.1
Or see this region's nucleotide sequence