Experiment: LB, 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20445 and SM_b20446 are separated by 9 nucleotides SM_b20446 and SM_b20447 are separated by 275 nucleotides
SM_b20445: SM_b20445 - alcohol dehydrogenase, at 456,313 to 457,371
_b20445
SM_b20446: SM_b20446 - mannonate dehydratase, at 457,381 to 458,589
_b20446
SM_b20447: SM_b20447 - hypothetical protein, at 458,865 to 460,559
_b20447
Position (kb) 457
458
459 Strain fitness (log2 ratio) -1
0
1
2 at 456.461 kb on - strand, within SM_b20445 at 456.461 kb on - strand, within SM_b20445 at 456.461 kb on - strand, within SM_b20445 at 456.463 kb on + strand, within SM_b20445 at 456.509 kb on + strand, within SM_b20445 at 456.702 kb on + strand, within SM_b20445 at 456.702 kb on + strand, within SM_b20445 at 456.702 kb on + strand, within SM_b20445 at 456.702 kb on + strand, within SM_b20445 at 456.702 kb on + strand, within SM_b20445 at 456.848 kb on + strand, within SM_b20445 at 456.849 kb on - strand, within SM_b20445 at 457.021 kb on + strand, within SM_b20445 at 457.021 kb on + strand, within SM_b20445 at 457.082 kb on + strand, within SM_b20445 at 457.149 kb on + strand, within SM_b20445 at 457.150 kb on - strand, within SM_b20445 at 457.389 kb on + strand at 457.389 kb on + strand at 457.389 kb on + strand at 457.389 kb on + strand at 457.390 kb on - strand at 457.390 kb on - strand at 457.390 kb on - strand at 457.390 kb on - strand at 457.685 kb on - strand, within SM_b20446 at 457.829 kb on - strand, within SM_b20446 at 457.909 kb on - strand, within SM_b20446 at 457.978 kb on + strand, within SM_b20446 at 457.978 kb on + strand, within SM_b20446 at 457.978 kb on + strand, within SM_b20446 at 457.978 kb on + strand, within SM_b20446 at 457.978 kb on + strand, within SM_b20446 at 457.978 kb on + strand, within SM_b20446 at 457.979 kb on - strand, within SM_b20446 at 457.979 kb on - strand, within SM_b20446 at 458.140 kb on + strand, within SM_b20446 at 458.140 kb on + strand, within SM_b20446 at 458.300 kb on + strand, within SM_b20446 at 458.300 kb on + strand, within SM_b20446 at 458.301 kb on - strand, within SM_b20446 at 458.301 kb on - strand, within SM_b20446 at 458.563 kb on + strand at 458.564 kb on - strand at 458.564 kb on - strand at 458.564 kb on - strand at 458.602 kb on + strand at 458.616 kb on - strand at 458.677 kb on - strand at 458.805 kb on + strand at 458.815 kb on + strand at 458.950 kb on - strand at 459.042 kb on + strand, within SM_b20447 at 459.042 kb on + strand, within SM_b20447 at 459.043 kb on - strand, within SM_b20447 at 459.213 kb on + strand, within SM_b20447 at 459.259 kb on + strand, within SM_b20447 at 459.259 kb on + strand, within SM_b20447 at 459.260 kb on - strand, within SM_b20447 at 459.490 kb on - strand, within SM_b20447 at 459.497 kb on - strand, within SM_b20447
Per-strain Table
Position Strand Gene LocusTag Fraction LB, 30C remove 456,461 - SM_b20445 0.14 -0.3 456,461 - SM_b20445 0.14 -0.2 456,461 - SM_b20445 0.14 -0.2 456,463 + SM_b20445 0.14 +0.1 456,509 + SM_b20445 0.19 -1.6 456,702 + SM_b20445 0.37 -0.7 456,702 + SM_b20445 0.37 -0.3 456,702 + SM_b20445 0.37 +0.1 456,702 + SM_b20445 0.37 +0.6 456,702 + SM_b20445 0.37 -0.3 456,848 + SM_b20445 0.51 +0.5 456,849 - SM_b20445 0.51 +0.0 457,021 + SM_b20445 0.67 -0.4 457,021 + SM_b20445 0.67 +1.5 457,082 + SM_b20445 0.73 +0.6 457,149 + SM_b20445 0.79 +0.7 457,150 - SM_b20445 0.79 +0.6 457,389 + -0.8 457,389 + -0.7 457,389 + -0.1 457,389 + +0.3 457,390 - +0.5 457,390 - +0.1 457,390 - +0.5 457,390 - +0.3 457,685 - SM_b20446 0.25 -0.1 457,829 - SM_b20446 0.37 -0.2 457,909 - SM_b20446 0.44 -0.2 457,978 + SM_b20446 0.49 -0.3 457,978 + SM_b20446 0.49 -1.2 457,978 + SM_b20446 0.49 -0.9 457,978 + SM_b20446 0.49 +0.5 457,978 + SM_b20446 0.49 +2.0 457,978 + SM_b20446 0.49 -0.1 457,979 - SM_b20446 0.49 -0.1 457,979 - SM_b20446 0.49 -0.7 458,140 + SM_b20446 0.63 -0.7 458,140 + SM_b20446 0.63 -0.2 458,300 + SM_b20446 0.76 -0.8 458,300 + SM_b20446 0.76 -0.6 458,301 - SM_b20446 0.76 +0.3 458,301 - SM_b20446 0.76 -1.0 458,563 + -0.1 458,564 - -0.1 458,564 - -0.3 458,564 - +0.3 458,602 + -0.5 458,616 - +0.2 458,677 - -0.1 458,805 + +0.3 458,815 + -0.5 458,950 - +0.1 459,042 + SM_b20447 0.10 -0.1 459,042 + SM_b20447 0.10 +1.0 459,043 - SM_b20447 0.11 -1.1 459,213 + SM_b20447 0.21 -0.8 459,259 + SM_b20447 0.23 -0.2 459,259 + SM_b20447 0.23 +0.9 459,260 - SM_b20447 0.23 -0.3 459,490 - SM_b20447 0.37 -0.5 459,497 - SM_b20447 0.37 -0.4
Or see this region's nucleotide sequence