Experiment: LB, 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20040 and SM_b20041 are separated by 190 nucleotides SM_b20041 and SM_b20042 are separated by 22 nucleotides SM_b20042 and SM_b20043 are separated by 373 nucleotides
SM_b20040: SM_b20040 - hypothetical protein, at 50,652 to 51,512
_b20040
SM_b20041: SM_b20041 - hypothetical protein, at 51,703 to 52,233
_b20041
SM_b20042: SM_b20042 - hypothetical protein, at 52,256 to 53,413
_b20042
SM_b20043: SM_b20043 - hypothetical protein, at 53,787 to 54,629
_b20043
Position (kb) 52
53
54 Strain fitness (log2 ratio) -2
-1
0
1
2 at 51.696 kb on + strand at 51.696 kb on + strand at 51.696 kb on + strand at 51.697 kb on - strand at 51.720 kb on - strand at 51.770 kb on + strand, within SM_b20041 at 51.925 kb on - strand, within SM_b20041 at 52.002 kb on + strand, within SM_b20041 at 52.012 kb on + strand, within SM_b20041 at 52.012 kb on + strand, within SM_b20041 at 52.012 kb on + strand, within SM_b20041 at 52.013 kb on - strand, within SM_b20041 at 52.165 kb on - strand, within SM_b20041 at 52.165 kb on - strand, within SM_b20041 at 52.606 kb on - strand, within SM_b20042 at 52.700 kb on - strand, within SM_b20042 at 52.700 kb on - strand, within SM_b20042 at 52.700 kb on - strand, within SM_b20042 at 52.700 kb on - strand, within SM_b20042 at 52.700 kb on - strand, within SM_b20042 at 53.213 kb on + strand, within SM_b20042 at 53.407 kb on - strand at 53.475 kb on + strand at 53.476 kb on - strand at 53.496 kb on + strand at 53.496 kb on + strand at 53.497 kb on - strand at 53.568 kb on + strand at 53.579 kb on + strand at 53.579 kb on + strand at 53.830 kb on + strand at 53.830 kb on + strand at 53.830 kb on + strand at 53.831 kb on - strand at 53.831 kb on - strand at 53.831 kb on - strand at 53.831 kb on - strand at 53.837 kb on + strand at 53.840 kb on - strand at 53.857 kb on - strand at 53.942 kb on + strand, within SM_b20043 at 53.942 kb on + strand, within SM_b20043 at 53.943 kb on - strand, within SM_b20043 at 54.014 kb on + strand, within SM_b20043 at 54.015 kb on - strand, within SM_b20043 at 54.015 kb on - strand, within SM_b20043 at 54.033 kb on - strand, within SM_b20043 at 54.177 kb on - strand, within SM_b20043 at 54.208 kb on + strand, within SM_b20043 at 54.232 kb on + strand, within SM_b20043 at 54.232 kb on + strand, within SM_b20043 at 54.286 kb on - strand, within SM_b20043 at 54.400 kb on - strand, within SM_b20043 at 54.400 kb on - strand, within SM_b20043 at 54.400 kb on - strand, within SM_b20043
Per-strain Table
Position Strand Gene LocusTag Fraction LB, 30C remove 51,696 + -0.1 51,696 + -1.4 51,696 + -0.1 51,697 - -0.3 51,720 - -0.1 51,770 + SM_b20041 0.13 -0.1 51,925 - SM_b20041 0.42 -0.1 52,002 + SM_b20041 0.56 -0.4 52,012 + SM_b20041 0.58 -0.8 52,012 + SM_b20041 0.58 +0.1 52,012 + SM_b20041 0.58 +0.1 52,013 - SM_b20041 0.58 +1.4 52,165 - SM_b20041 0.87 +0.1 52,165 - SM_b20041 0.87 -1.1 52,606 - SM_b20042 0.30 -0.8 52,700 - SM_b20042 0.38 -1.2 52,700 - SM_b20042 0.38 -1.0 52,700 - SM_b20042 0.38 +0.1 52,700 - SM_b20042 0.38 -0.9 52,700 - SM_b20042 0.38 -1.8 53,213 + SM_b20042 0.83 -1.1 53,407 - -0.7 53,475 + -2.1 53,476 - -0.1 53,496 + -0.1 53,496 + -0.2 53,497 - +0.0 53,568 + -0.3 53,579 + -0.7 53,579 + -0.3 53,830 + -0.4 53,830 + +0.1 53,830 + +0.3 53,831 - +0.7 53,831 - +1.1 53,831 - +0.4 53,831 - +0.2 53,837 + +0.9 53,840 - +0.2 53,857 - +0.3 53,942 + SM_b20043 0.18 +0.0 53,942 + SM_b20043 0.18 +0.8 53,943 - SM_b20043 0.19 -0.1 54,014 + SM_b20043 0.27 +0.2 54,015 - SM_b20043 0.27 -0.9 54,015 - SM_b20043 0.27 +0.0 54,033 - SM_b20043 0.29 +0.5 54,177 - SM_b20043 0.46 +0.3 54,208 + SM_b20043 0.50 +2.4 54,232 + SM_b20043 0.53 -0.1 54,232 + SM_b20043 0.53 +0.0 54,286 - SM_b20043 0.59 +0.4 54,400 - SM_b20043 0.73 +0.2 54,400 - SM_b20043 0.73 +0.2 54,400 - SM_b20043 0.73 +0.1
Or see this region's nucleotide sequence