Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS36770

Experiment: Ethanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS36760 and RR42_RS36765 are separated by 26 nucleotidesRR42_RS36765 and RR42_RS36770 are separated by 109 nucleotidesRR42_RS36770 and RR42_RS36775 are separated by 2 nucleotides RR42_RS36760: RR42_RS36760 - hypothetical protein, at 3,701,678 to 3,702,298 _RS36760 RR42_RS36765: RR42_RS36765 - cbb3-type cytochrome C oxidase subunit III, at 3,702,325 to 3,702,930 _RS36765 RR42_RS36770: RR42_RS36770 - hypothetical protein, at 3,703,040 to 3,703,684 _RS36770 RR42_RS36775: RR42_RS36775 - membrane protein, at 3,703,687 to 3,705,333 _RS36775 Position (kb) 3703 3704Strain fitness (log2 ratio) -2 -1 0 1 2at 3702.542 kb on + strand, within RR42_RS36765at 3702.542 kb on + strand, within RR42_RS36765at 3702.542 kb on + strand, within RR42_RS36765at 3702.543 kb on - strand, within RR42_RS36765at 3702.543 kb on - strand, within RR42_RS36765at 3702.543 kb on - strand, within RR42_RS36765at 3702.543 kb on - strand, within RR42_RS36765at 3702.543 kb on - strand, within RR42_RS36765at 3702.543 kb on - strand, within RR42_RS36765at 3702.543 kb on - strand, within RR42_RS36765at 3702.709 kb on + strand, within RR42_RS36765at 3702.710 kb on - strand, within RR42_RS36765at 3702.710 kb on - strand, within RR42_RS36765at 3702.710 kb on - strand, within RR42_RS36765at 3702.815 kb on + strand, within RR42_RS36765at 3702.909 kb on + strandat 3703.140 kb on + strand, within RR42_RS36770at 3703.299 kb on + strand, within RR42_RS36770at 3703.299 kb on + strand, within RR42_RS36770at 3703.300 kb on - strand, within RR42_RS36770at 3703.314 kb on + strand, within RR42_RS36770at 3703.419 kb on + strand, within RR42_RS36770at 3703.420 kb on - strand, within RR42_RS36770at 3703.527 kb on + strand, within RR42_RS36770at 3703.560 kb on + strand, within RR42_RS36770at 3703.561 kb on - strand, within RR42_RS36770at 3703.920 kb on - strand, within RR42_RS36775at 3703.920 kb on - strand, within RR42_RS36775at 3703.920 kb on - strand, within RR42_RS36775at 3703.920 kb on - strand, within RR42_RS36775at 3704.012 kb on + strand, within RR42_RS36775at 3704.012 kb on + strand, within RR42_RS36775at 3704.012 kb on + strand, within RR42_RS36775at 3704.013 kb on - strand, within RR42_RS36775at 3704.013 kb on - strand, within RR42_RS36775at 3704.048 kb on + strand, within RR42_RS36775at 3704.048 kb on + strand, within RR42_RS36775at 3704.048 kb on + strand, within RR42_RS36775at 3704.049 kb on - strand, within RR42_RS36775at 3704.049 kb on - strand, within RR42_RS36775at 3704.049 kb on - strand, within RR42_RS36775at 3704.151 kb on - strand, within RR42_RS36775at 3704.151 kb on - strand, within RR42_RS36775at 3704.349 kb on - strand, within RR42_RS36775at 3704.349 kb on - strand, within RR42_RS36775at 3704.388 kb on + strand, within RR42_RS36775at 3704.388 kb on + strand, within RR42_RS36775at 3704.389 kb on - strand, within RR42_RS36775at 3704.391 kb on - strand, within RR42_RS36775at 3704.391 kb on - strand, within RR42_RS36775at 3704.429 kb on + strand, within RR42_RS36775at 3704.429 kb on + strand, within RR42_RS36775at 3704.457 kb on + strand, within RR42_RS36775at 3704.458 kb on - strand, within RR42_RS36775at 3704.458 kb on - strand, within RR42_RS36775at 3704.460 kb on - strand, within RR42_RS36775at 3704.460 kb on - strand, within RR42_RS36775at 3704.460 kb on - strand, within RR42_RS36775at 3704.477 kb on - strand, within RR42_RS36775at 3704.549 kb on + strand, within RR42_RS36775at 3704.549 kb on + strand, within RR42_RS36775at 3704.549 kb on + strand, within RR42_RS36775at 3704.550 kb on - strand, within RR42_RS36775at 3704.550 kb on - strand, within RR42_RS36775at 3704.550 kb on - strand, within RR42_RS36775at 3704.550 kb on - strand, within RR42_RS36775at 3704.585 kb on + strand, within RR42_RS36775at 3704.601 kb on - strand, within RR42_RS36775at 3704.601 kb on - strand, within RR42_RS36775at 3704.601 kb on - strand, within RR42_RS36775at 3704.601 kb on - strand, within RR42_RS36775

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
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3,702,542 + RR42_RS36765 0.36 -0.7
3,702,542 + RR42_RS36765 0.36 +0.1
3,702,542 + RR42_RS36765 0.36 +0.6
3,702,543 - RR42_RS36765 0.36 +0.3
3,702,543 - RR42_RS36765 0.36 +0.3
3,702,543 - RR42_RS36765 0.36 +0.1
3,702,543 - RR42_RS36765 0.36 +0.7
3,702,543 - RR42_RS36765 0.36 -0.0
3,702,543 - RR42_RS36765 0.36 -0.2
3,702,543 - RR42_RS36765 0.36 -0.1
3,702,709 + RR42_RS36765 0.63 -0.8
3,702,710 - RR42_RS36765 0.64 +1.0
3,702,710 - RR42_RS36765 0.64 +0.1
3,702,710 - RR42_RS36765 0.64 -1.3
3,702,815 + RR42_RS36765 0.81 -0.6
3,702,909 + +0.5
3,703,140 + RR42_RS36770 0.16 +1.6
3,703,299 + RR42_RS36770 0.40 -0.1
3,703,299 + RR42_RS36770 0.40 +0.7
3,703,300 - RR42_RS36770 0.40 +0.6
3,703,314 + RR42_RS36770 0.42 +0.9
3,703,419 + RR42_RS36770 0.59 +1.2
3,703,420 - RR42_RS36770 0.59 +0.5
3,703,527 + RR42_RS36770 0.76 +0.6
3,703,560 + RR42_RS36770 0.81 +0.1
3,703,561 - RR42_RS36770 0.81 +0.7
3,703,920 - RR42_RS36775 0.14 -0.6
3,703,920 - RR42_RS36775 0.14 -0.3
3,703,920 - RR42_RS36775 0.14 +0.0
3,703,920 - RR42_RS36775 0.14 +0.7
3,704,012 + RR42_RS36775 0.20 -0.3
3,704,012 + RR42_RS36775 0.20 +0.0
3,704,012 + RR42_RS36775 0.20 +0.1
3,704,013 - RR42_RS36775 0.20 +0.0
3,704,013 - RR42_RS36775 0.20 -0.7
3,704,048 + RR42_RS36775 0.22 -1.8
3,704,048 + RR42_RS36775 0.22 -0.3
3,704,048 + RR42_RS36775 0.22 -0.4
3,704,049 - RR42_RS36775 0.22 -0.7
3,704,049 - RR42_RS36775 0.22 +1.4
3,704,049 - RR42_RS36775 0.22 +1.1
3,704,151 - RR42_RS36775 0.28 +0.7
3,704,151 - RR42_RS36775 0.28 +0.2
3,704,349 - RR42_RS36775 0.40 +0.5
3,704,349 - RR42_RS36775 0.40 -0.4
3,704,388 + RR42_RS36775 0.43 +0.3
3,704,388 + RR42_RS36775 0.43 +0.5
3,704,389 - RR42_RS36775 0.43 +0.5
3,704,391 - RR42_RS36775 0.43 -0.8
3,704,391 - RR42_RS36775 0.43 +0.9
3,704,429 + RR42_RS36775 0.45 +0.1
3,704,429 + RR42_RS36775 0.45 -1.7
3,704,457 + RR42_RS36775 0.47 +0.0
3,704,458 - RR42_RS36775 0.47 +0.3
3,704,458 - RR42_RS36775 0.47 -0.6
3,704,460 - RR42_RS36775 0.47 +0.6
3,704,460 - RR42_RS36775 0.47 -0.9
3,704,460 - RR42_RS36775 0.47 -0.2
3,704,477 - RR42_RS36775 0.48 +0.4
3,704,549 + RR42_RS36775 0.52 +0.3
3,704,549 + RR42_RS36775 0.52 -0.4
3,704,549 + RR42_RS36775 0.52 +0.3
3,704,550 - RR42_RS36775 0.52 +2.1
3,704,550 - RR42_RS36775 0.52 +0.4
3,704,550 - RR42_RS36775 0.52 -0.5
3,704,550 - RR42_RS36775 0.52 +0.5
3,704,585 + RR42_RS36775 0.55 -0.2
3,704,601 - RR42_RS36775 0.55 -0.2
3,704,601 - RR42_RS36775 0.55 -0.5
3,704,601 - RR42_RS36775 0.55 -0.7
3,704,601 - RR42_RS36775 0.55 -1.9

Or see this region's nucleotide sequence