Experiment: Ethanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS28185 and RR42_RS28190 are separated by 84 nucleotides RR42_RS28190 and RR42_RS28195 are separated by 73 nucleotides RR42_RS28195 and RR42_RS28200 overlap by 8 nucleotides RR42_RS28200 and RR42_RS28205 are separated by 168 nucleotides
RR42_RS28185: RR42_RS28185 - GntR family transcriptional regulator, at 1,679,978 to 1,681,423
_RS28185
RR42_RS28190: RR42_RS28190 - MerR family transcriptional regulator, at 1,681,508 to 1,681,945
_RS28190
RR42_RS28195: RR42_RS28195 - SAM-dependent methyltransferase, at 1,682,019 to 1,682,897
_RS28195
RR42_RS28200: RR42_RS28200 - membrane protein, at 1,682,890 to 1,683,411
_RS28200
RR42_RS28205: RR42_RS28205 - hypothetical protein, at 1,683,580 to 1,685,718
_RS28205
Position (kb)
1682
1683 Strain fitness (log2 ratio)
-2
-1
0
1 at 1681.139 kb on + strand, within RR42_RS28185 at 1681.140 kb on - strand, within RR42_RS28185 at 1681.140 kb on - strand, within RR42_RS28185 at 1681.320 kb on - strand at 1681.320 kb on - strand at 1681.320 kb on - strand at 1681.322 kb on + strand at 1681.322 kb on + strand at 1681.323 kb on - strand at 1681.464 kb on + strand at 1681.852 kb on + strand, within RR42_RS28190 at 1681.878 kb on + strand, within RR42_RS28190 at 1681.928 kb on + strand at 1681.928 kb on + strand at 1681.928 kb on + strand at 1681.929 kb on - strand at 1681.935 kb on - strand at 1681.982 kb on + strand at 1681.982 kb on + strand at 1681.982 kb on + strand at 1681.982 kb on + strand at 1681.982 kb on + strand at 1681.983 kb on - strand at 1681.983 kb on - strand at 1682.701 kb on - strand, within RR42_RS28195 at 1682.798 kb on + strand, within RR42_RS28195 at 1682.799 kb on + strand, within RR42_RS28195 at 1682.799 kb on + strand, within RR42_RS28195 at 1682.908 kb on + strand at 1682.909 kb on - strand at 1683.121 kb on + strand, within RR42_RS28200 at 1683.156 kb on - strand, within RR42_RS28200 at 1683.285 kb on + strand, within RR42_RS28200 at 1683.285 kb on + strand, within RR42_RS28200 at 1683.286 kb on - strand, within RR42_RS28200 at 1683.315 kb on + strand, within RR42_RS28200 at 1683.316 kb on - strand, within RR42_RS28200 at 1683.352 kb on + strand, within RR42_RS28200 at 1683.503 kb on + strand at 1683.504 kb on - strand at 1683.508 kb on + strand at 1683.510 kb on + strand at 1683.511 kb on - strand at 1683.549 kb on + strand at 1683.580 kb on - strand at 1683.688 kb on - strand at 1683.751 kb on + strand at 1683.751 kb on + strand at 1683.769 kb on + strand at 1683.822 kb on + strand, within RR42_RS28205 at 1683.880 kb on + strand, within RR42_RS28205
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol (C) remove 1,681,139 + RR42_RS28185 0.80 -0.4 1,681,140 - RR42_RS28185 0.80 +0.1 1,681,140 - RR42_RS28185 0.80 +0.6 1,681,320 - -0.9 1,681,320 - -0.0 1,681,320 - -0.6 1,681,322 + -0.4 1,681,322 + -0.1 1,681,323 - +1.0 1,681,464 + +0.1 1,681,852 + RR42_RS28190 0.79 -0.2 1,681,878 + RR42_RS28190 0.84 +0.2 1,681,928 + +0.2 1,681,928 + -0.8 1,681,928 + +0.1 1,681,929 - +0.7 1,681,935 - +0.1 1,681,982 + -0.7 1,681,982 + -0.4 1,681,982 + -0.9 1,681,982 + +0.3 1,681,982 + -0.4 1,681,983 - -0.3 1,681,983 - +0.8 1,682,701 - RR42_RS28195 0.78 +1.2 1,682,798 + RR42_RS28195 0.89 +0.6 1,682,799 + RR42_RS28195 0.89 -0.0 1,682,799 + RR42_RS28195 0.89 +0.3 1,682,908 + +0.4 1,682,909 - -0.5 1,683,121 + RR42_RS28200 0.44 -0.9 1,683,156 - RR42_RS28200 0.51 -0.0 1,683,285 + RR42_RS28200 0.76 +0.2 1,683,285 + RR42_RS28200 0.76 +1.3 1,683,286 - RR42_RS28200 0.76 -1.8 1,683,315 + RR42_RS28200 0.81 +0.4 1,683,316 - RR42_RS28200 0.82 -0.3 1,683,352 + RR42_RS28200 0.89 -0.1 1,683,503 + -0.0 1,683,504 - -0.2 1,683,508 + +0.3 1,683,510 + -0.1 1,683,511 - -0.2 1,683,549 + -2.4 1,683,580 - -0.0 1,683,688 - +0.3 1,683,751 + +1.6 1,683,751 + +0.6 1,683,769 + +1.0 1,683,822 + RR42_RS28205 0.11 +1.1 1,683,880 + RR42_RS28205 0.14 -1.1
Or see this region's nucleotide sequence