Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS28195

Experiment: Ethanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS28185 and RR42_RS28190 are separated by 84 nucleotidesRR42_RS28190 and RR42_RS28195 are separated by 73 nucleotidesRR42_RS28195 and RR42_RS28200 overlap by 8 nucleotidesRR42_RS28200 and RR42_RS28205 are separated by 168 nucleotides RR42_RS28185: RR42_RS28185 - GntR family transcriptional regulator, at 1,679,978 to 1,681,423 _RS28185 RR42_RS28190: RR42_RS28190 - MerR family transcriptional regulator, at 1,681,508 to 1,681,945 _RS28190 RR42_RS28195: RR42_RS28195 - SAM-dependent methyltransferase, at 1,682,019 to 1,682,897 _RS28195 RR42_RS28200: RR42_RS28200 - membrane protein, at 1,682,890 to 1,683,411 _RS28200 RR42_RS28205: RR42_RS28205 - hypothetical protein, at 1,683,580 to 1,685,718 _RS28205 Position (kb) 1682 1683Strain fitness (log2 ratio) -2 -1 0 1at 1681.139 kb on + strand, within RR42_RS28185at 1681.140 kb on - strand, within RR42_RS28185at 1681.140 kb on - strand, within RR42_RS28185at 1681.320 kb on - strandat 1681.320 kb on - strandat 1681.320 kb on - strandat 1681.322 kb on + strandat 1681.322 kb on + strandat 1681.323 kb on - strandat 1681.464 kb on + strandat 1681.852 kb on + strand, within RR42_RS28190at 1681.878 kb on + strand, within RR42_RS28190at 1681.928 kb on + strandat 1681.928 kb on + strandat 1681.928 kb on + strandat 1681.929 kb on - strandat 1681.935 kb on - strandat 1681.982 kb on + strandat 1681.982 kb on + strandat 1681.982 kb on + strandat 1681.982 kb on + strandat 1681.982 kb on + strandat 1681.983 kb on - strandat 1681.983 kb on - strandat 1682.701 kb on - strand, within RR42_RS28195at 1682.798 kb on + strand, within RR42_RS28195at 1682.799 kb on + strand, within RR42_RS28195at 1682.799 kb on + strand, within RR42_RS28195at 1682.908 kb on + strandat 1682.909 kb on - strandat 1683.121 kb on + strand, within RR42_RS28200at 1683.156 kb on - strand, within RR42_RS28200at 1683.285 kb on + strand, within RR42_RS28200at 1683.285 kb on + strand, within RR42_RS28200at 1683.286 kb on - strand, within RR42_RS28200at 1683.315 kb on + strand, within RR42_RS28200at 1683.316 kb on - strand, within RR42_RS28200at 1683.352 kb on + strand, within RR42_RS28200at 1683.503 kb on + strandat 1683.504 kb on - strandat 1683.508 kb on + strandat 1683.510 kb on + strandat 1683.511 kb on - strandat 1683.549 kb on + strandat 1683.580 kb on - strandat 1683.688 kb on - strandat 1683.751 kb on + strandat 1683.751 kb on + strandat 1683.769 kb on + strandat 1683.822 kb on + strand, within RR42_RS28205at 1683.880 kb on + strand, within RR42_RS28205

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
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1,681,139 + RR42_RS28185 0.80 -0.4
1,681,140 - RR42_RS28185 0.80 +0.1
1,681,140 - RR42_RS28185 0.80 +0.6
1,681,320 - -0.9
1,681,320 - -0.0
1,681,320 - -0.6
1,681,322 + -0.4
1,681,322 + -0.1
1,681,323 - +1.0
1,681,464 + +0.1
1,681,852 + RR42_RS28190 0.79 -0.2
1,681,878 + RR42_RS28190 0.84 +0.2
1,681,928 + +0.2
1,681,928 + -0.8
1,681,928 + +0.1
1,681,929 - +0.7
1,681,935 - +0.1
1,681,982 + -0.7
1,681,982 + -0.4
1,681,982 + -0.9
1,681,982 + +0.3
1,681,982 + -0.4
1,681,983 - -0.3
1,681,983 - +0.8
1,682,701 - RR42_RS28195 0.78 +1.2
1,682,798 + RR42_RS28195 0.89 +0.6
1,682,799 + RR42_RS28195 0.89 -0.0
1,682,799 + RR42_RS28195 0.89 +0.3
1,682,908 + +0.4
1,682,909 - -0.5
1,683,121 + RR42_RS28200 0.44 -0.9
1,683,156 - RR42_RS28200 0.51 -0.0
1,683,285 + RR42_RS28200 0.76 +0.2
1,683,285 + RR42_RS28200 0.76 +1.3
1,683,286 - RR42_RS28200 0.76 -1.8
1,683,315 + RR42_RS28200 0.81 +0.4
1,683,316 - RR42_RS28200 0.82 -0.3
1,683,352 + RR42_RS28200 0.89 -0.1
1,683,503 + -0.0
1,683,504 - -0.2
1,683,508 + +0.3
1,683,510 + -0.1
1,683,511 - -0.2
1,683,549 + -2.4
1,683,580 - -0.0
1,683,688 - +0.3
1,683,751 + +1.6
1,683,751 + +0.6
1,683,769 + +1.0
1,683,822 + RR42_RS28205 0.11 +1.1
1,683,880 + RR42_RS28205 0.14 -1.1

Or see this region's nucleotide sequence