Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS25010

Experiment: Ethanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS25005 and RR42_RS25010 are separated by 60 nucleotidesRR42_RS25010 and RR42_RS25015 are separated by 150 nucleotides RR42_RS25005: RR42_RS25005 - betaine-aldehyde dehydrogenase, at 947,308 to 948,795 _RS25005 RR42_RS25010: RR42_RS25010 - betaine-aldehyde dehydrogenase, at 948,856 to 950,313 _RS25010 RR42_RS25015: RR42_RS25015 - gluconolactonase, at 950,464 to 951,348 _RS25015 Position (kb) 948 949 950 951Strain fitness (log2 ratio) -3 -2 -1 0 1at 948.166 kb on + strand, within RR42_RS25005at 948.244 kb on - strand, within RR42_RS25005at 948.417 kb on + strand, within RR42_RS25005at 948.417 kb on - strand, within RR42_RS25005at 948.780 kb on - strandat 948.780 kb on - strandat 948.858 kb on - strandat 948.890 kb on + strandat 948.891 kb on - strandat 948.891 kb on - strandat 948.942 kb on - strandat 948.942 kb on - strandat 948.977 kb on + strandat 948.977 kb on + strandat 948.978 kb on - strandat 949.070 kb on + strand, within RR42_RS25010at 949.070 kb on + strand, within RR42_RS25010at 949.071 kb on - strand, within RR42_RS25010at 949.209 kb on - strand, within RR42_RS25010at 949.278 kb on - strand, within RR42_RS25010at 949.278 kb on - strand, within RR42_RS25010at 949.278 kb on - strand, within RR42_RS25010at 949.358 kb on + strand, within RR42_RS25010at 949.359 kb on - strand, within RR42_RS25010at 949.881 kb on + strand, within RR42_RS25010at 949.881 kb on + strand, within RR42_RS25010at 949.881 kb on + strand, within RR42_RS25010at 949.882 kb on - strand, within RR42_RS25010at 949.946 kb on + strand, within RR42_RS25010at 949.987 kb on - strand, within RR42_RS25010at 950.067 kb on + strand, within RR42_RS25010at 950.249 kb on - strandat 950.397 kb on - strandat 950.397 kb on - strandat 950.397 kb on - strandat 950.600 kb on + strand, within RR42_RS25015at 950.600 kb on + strand, within RR42_RS25015at 950.601 kb on - strand, within RR42_RS25015at 951.263 kb on + strandat 951.269 kb on + strandat 951.269 kb on + strandat 951.269 kb on + strandat 951.270 kb on - strandat 951.270 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
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948,166 + RR42_RS25005 0.58 -0.1
948,244 - RR42_RS25005 0.63 +0.5
948,417 + RR42_RS25005 0.75 +0.2
948,417 - RR42_RS25005 0.75 -0.6
948,780 - -0.1
948,780 - -0.4
948,858 - +1.0
948,890 + -1.1
948,891 - -0.3
948,891 - +0.4
948,942 - -1.3
948,942 - +0.2
948,977 + +0.3
948,977 + -0.3
948,978 - +0.6
949,070 + RR42_RS25010 0.15 +0.3
949,070 + RR42_RS25010 0.15 -1.8
949,071 - RR42_RS25010 0.15 -0.1
949,209 - RR42_RS25010 0.24 +0.1
949,278 - RR42_RS25010 0.29 +0.3
949,278 - RR42_RS25010 0.29 +0.2
949,278 - RR42_RS25010 0.29 -0.2
949,358 + RR42_RS25010 0.34 -2.8
949,359 - RR42_RS25010 0.34 -1.7
949,881 + RR42_RS25010 0.70 -0.1
949,881 + RR42_RS25010 0.70 +0.5
949,881 + RR42_RS25010 0.70 +0.8
949,882 - RR42_RS25010 0.70 +0.1
949,946 + RR42_RS25010 0.75 -0.2
949,987 - RR42_RS25010 0.78 -0.5
950,067 + RR42_RS25010 0.83 -0.4
950,249 - -1.0
950,397 - -0.1
950,397 - -2.4
950,397 - -0.1
950,600 + RR42_RS25015 0.15 -0.1
950,600 + RR42_RS25015 0.15 +0.3
950,601 - RR42_RS25015 0.15 +0.3
951,263 + +1.4
951,269 + +0.6
951,269 + +0.2
951,269 + +0.1
951,270 - -2.7
951,270 - -0.8

Or see this region's nucleotide sequence