Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS25005

Experiment: Ethanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS25000 and RR42_RS25005 are separated by 53 nucleotidesRR42_RS25005 and RR42_RS25010 are separated by 60 nucleotides RR42_RS25000: RR42_RS25000 - iditol 2-dehydrogenase, at 946,184 to 947,254 _RS25000 RR42_RS25005: RR42_RS25005 - betaine-aldehyde dehydrogenase, at 947,308 to 948,795 _RS25005 RR42_RS25010: RR42_RS25010 - betaine-aldehyde dehydrogenase, at 948,856 to 950,313 _RS25010 Position (kb) 947 948 949Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 946.571 kb on - strand, within RR42_RS25000at 946.621 kb on + strand, within RR42_RS25000at 946.622 kb on - strand, within RR42_RS25000at 946.622 kb on - strand, within RR42_RS25000at 946.839 kb on + strand, within RR42_RS25000at 946.944 kb on + strand, within RR42_RS25000at 947.174 kb on + strandat 947.241 kb on - strandat 947.241 kb on - strandat 947.254 kb on + strandat 947.254 kb on + strandat 947.255 kb on - strandat 947.268 kb on + strandat 947.269 kb on - strandat 947.276 kb on - strandat 947.324 kb on + strandat 947.325 kb on - strandat 947.340 kb on - strandat 947.345 kb on + strandat 947.345 kb on + strandat 947.346 kb on - strandat 947.346 kb on - strandat 947.663 kb on + strand, within RR42_RS25005at 947.742 kb on - strand, within RR42_RS25005at 947.742 kb on - strand, within RR42_RS25005at 947.742 kb on - strand, within RR42_RS25005at 947.829 kb on + strand, within RR42_RS25005at 947.830 kb on - strand, within RR42_RS25005at 948.166 kb on + strand, within RR42_RS25005at 948.244 kb on - strand, within RR42_RS25005at 948.417 kb on + strand, within RR42_RS25005at 948.417 kb on - strand, within RR42_RS25005at 948.780 kb on - strandat 948.780 kb on - strandat 948.858 kb on - strandat 948.890 kb on + strandat 948.891 kb on - strandat 948.891 kb on - strandat 948.942 kb on - strandat 948.942 kb on - strandat 948.977 kb on + strandat 948.977 kb on + strandat 948.978 kb on - strandat 949.070 kb on + strand, within RR42_RS25010at 949.070 kb on + strand, within RR42_RS25010at 949.071 kb on - strand, within RR42_RS25010at 949.209 kb on - strand, within RR42_RS25010at 949.278 kb on - strand, within RR42_RS25010at 949.278 kb on - strand, within RR42_RS25010at 949.278 kb on - strand, within RR42_RS25010at 949.358 kb on + strand, within RR42_RS25010at 949.359 kb on - strand, within RR42_RS25010

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
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946,571 - RR42_RS25000 0.36 -0.9
946,621 + RR42_RS25000 0.41 +0.2
946,622 - RR42_RS25000 0.41 +0.2
946,622 - RR42_RS25000 0.41 +0.8
946,839 + RR42_RS25000 0.61 +0.2
946,944 + RR42_RS25000 0.71 -1.5
947,174 + +0.2
947,241 - +0.9
947,241 - +0.2
947,254 + +2.2
947,254 + -0.4
947,255 - +0.1
947,268 + +0.3
947,269 - -0.5
947,276 - +1.1
947,324 + -0.7
947,325 - -0.7
947,340 - +0.9
947,345 + +0.6
947,345 + +0.3
947,346 - +0.4
947,346 - +0.2
947,663 + RR42_RS25005 0.24 +0.1
947,742 - RR42_RS25005 0.29 -0.0
947,742 - RR42_RS25005 0.29 -0.6
947,742 - RR42_RS25005 0.29 -1.2
947,829 + RR42_RS25005 0.35 +1.3
947,830 - RR42_RS25005 0.35 +0.0
948,166 + RR42_RS25005 0.58 -0.1
948,244 - RR42_RS25005 0.63 +0.5
948,417 + RR42_RS25005 0.75 +0.2
948,417 - RR42_RS25005 0.75 -0.6
948,780 - -0.1
948,780 - -0.4
948,858 - +1.0
948,890 + -1.1
948,891 - -0.3
948,891 - +0.4
948,942 - -1.3
948,942 - +0.2
948,977 + +0.3
948,977 + -0.3
948,978 - +0.6
949,070 + RR42_RS25010 0.15 +0.3
949,070 + RR42_RS25010 0.15 -1.8
949,071 - RR42_RS25010 0.15 -0.1
949,209 - RR42_RS25010 0.24 +0.1
949,278 - RR42_RS25010 0.29 +0.3
949,278 - RR42_RS25010 0.29 +0.2
949,278 - RR42_RS25010 0.29 -0.2
949,358 + RR42_RS25010 0.34 -2.8
949,359 - RR42_RS25010 0.34 -1.7

Or see this region's nucleotide sequence