Experiment: Ethanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS25000 and RR42_RS25005 are separated by 53 nucleotides RR42_RS25005 and RR42_RS25010 are separated by 60 nucleotides
RR42_RS25000: RR42_RS25000 - iditol 2-dehydrogenase, at 946,184 to 947,254
_RS25000
RR42_RS25005: RR42_RS25005 - betaine-aldehyde dehydrogenase, at 947,308 to 948,795
_RS25005
RR42_RS25010: RR42_RS25010 - betaine-aldehyde dehydrogenase, at 948,856 to 950,313
_RS25010
Position (kb)
947
948
949 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 946.571 kb on - strand, within RR42_RS25000 at 946.621 kb on + strand, within RR42_RS25000 at 946.622 kb on - strand, within RR42_RS25000 at 946.622 kb on - strand, within RR42_RS25000 at 946.839 kb on + strand, within RR42_RS25000 at 946.944 kb on + strand, within RR42_RS25000 at 947.174 kb on + strand at 947.241 kb on - strand at 947.241 kb on - strand at 947.254 kb on + strand at 947.254 kb on + strand at 947.255 kb on - strand at 947.268 kb on + strand at 947.269 kb on - strand at 947.276 kb on - strand at 947.324 kb on + strand at 947.325 kb on - strand at 947.340 kb on - strand at 947.345 kb on + strand at 947.345 kb on + strand at 947.346 kb on - strand at 947.346 kb on - strand at 947.663 kb on + strand, within RR42_RS25005 at 947.742 kb on - strand, within RR42_RS25005 at 947.742 kb on - strand, within RR42_RS25005 at 947.742 kb on - strand, within RR42_RS25005 at 947.829 kb on + strand, within RR42_RS25005 at 947.830 kb on - strand, within RR42_RS25005 at 948.166 kb on + strand, within RR42_RS25005 at 948.244 kb on - strand, within RR42_RS25005 at 948.417 kb on + strand, within RR42_RS25005 at 948.417 kb on - strand, within RR42_RS25005 at 948.780 kb on - strand at 948.780 kb on - strand at 948.858 kb on - strand at 948.890 kb on + strand at 948.891 kb on - strand at 948.891 kb on - strand at 948.942 kb on - strand at 948.942 kb on - strand at 948.977 kb on + strand at 948.977 kb on + strand at 948.978 kb on - strand at 949.070 kb on + strand, within RR42_RS25010 at 949.070 kb on + strand, within RR42_RS25010 at 949.071 kb on - strand, within RR42_RS25010 at 949.209 kb on - strand, within RR42_RS25010 at 949.278 kb on - strand, within RR42_RS25010 at 949.278 kb on - strand, within RR42_RS25010 at 949.278 kb on - strand, within RR42_RS25010 at 949.358 kb on + strand, within RR42_RS25010 at 949.359 kb on - strand, within RR42_RS25010
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol (C) remove 946,571 - RR42_RS25000 0.36 -0.9 946,621 + RR42_RS25000 0.41 +0.2 946,622 - RR42_RS25000 0.41 +0.2 946,622 - RR42_RS25000 0.41 +0.8 946,839 + RR42_RS25000 0.61 +0.2 946,944 + RR42_RS25000 0.71 -1.5 947,174 + +0.2 947,241 - +0.9 947,241 - +0.2 947,254 + +2.2 947,254 + -0.4 947,255 - +0.1 947,268 + +0.3 947,269 - -0.5 947,276 - +1.1 947,324 + -0.7 947,325 - -0.7 947,340 - +0.9 947,345 + +0.6 947,345 + +0.3 947,346 - +0.4 947,346 - +0.2 947,663 + RR42_RS25005 0.24 +0.1 947,742 - RR42_RS25005 0.29 -0.0 947,742 - RR42_RS25005 0.29 -0.6 947,742 - RR42_RS25005 0.29 -1.2 947,829 + RR42_RS25005 0.35 +1.3 947,830 - RR42_RS25005 0.35 +0.0 948,166 + RR42_RS25005 0.58 -0.1 948,244 - RR42_RS25005 0.63 +0.5 948,417 + RR42_RS25005 0.75 +0.2 948,417 - RR42_RS25005 0.75 -0.6 948,780 - -0.1 948,780 - -0.4 948,858 - +1.0 948,890 + -1.1 948,891 - -0.3 948,891 - +0.4 948,942 - -1.3 948,942 - +0.2 948,977 + +0.3 948,977 + -0.3 948,978 - +0.6 949,070 + RR42_RS25010 0.15 +0.3 949,070 + RR42_RS25010 0.15 -1.8 949,071 - RR42_RS25010 0.15 -0.1 949,209 - RR42_RS25010 0.24 +0.1 949,278 - RR42_RS25010 0.29 +0.3 949,278 - RR42_RS25010 0.29 +0.2 949,278 - RR42_RS25010 0.29 -0.2 949,358 + RR42_RS25010 0.34 -2.8 949,359 - RR42_RS25010 0.34 -1.7
Or see this region's nucleotide sequence