Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS24970

Experiment: Ethanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS24965 and RR42_RS24970 are separated by 98 nucleotidesRR42_RS24970 and RR42_RS24975 are separated by 48 nucleotides RR42_RS24965: RR42_RS24965 - acyl-CoA dehydrogenase, at 938,788 to 939,945 _RS24965 RR42_RS24970: RR42_RS24970 - acetyl-CoA acetyltransferase, at 940,044 to 941,252 _RS24970 RR42_RS24975: RR42_RS24975 - acetyl-CoA hydrolase, at 941,301 to 942,617 _RS24975 Position (kb) 940 941 942Strain fitness (log2 ratio) -1 0 1 2 3at 939.065 kb on + strand, within RR42_RS24965at 939.065 kb on + strand, within RR42_RS24965at 939.280 kb on - strand, within RR42_RS24965at 939.280 kb on - strand, within RR42_RS24965at 939.435 kb on + strand, within RR42_RS24965at 939.506 kb on + strand, within RR42_RS24965at 939.507 kb on - strand, within RR42_RS24965at 939.959 kb on - strandat 940.730 kb on + strand, within RR42_RS24970at 940.730 kb on + strand, within RR42_RS24970at 940.730 kb on + strand, within RR42_RS24970at 940.731 kb on - strand, within RR42_RS24970at 940.731 kb on - strand, within RR42_RS24970at 940.735 kb on + strand, within RR42_RS24970at 940.735 kb on + strand, within RR42_RS24970at 940.736 kb on - strand, within RR42_RS24970at 940.835 kb on - strand, within RR42_RS24970at 940.882 kb on + strand, within RR42_RS24970at 940.882 kb on + strand, within RR42_RS24970at 941.058 kb on + strand, within RR42_RS24970at 941.059 kb on - strand, within RR42_RS24970at 941.281 kb on + strandat 941.282 kb on - strandat 941.632 kb on + strand, within RR42_RS24975at 941.633 kb on - strand, within RR42_RS24975at 941.633 kb on - strand, within RR42_RS24975at 941.742 kb on - strand, within RR42_RS24975at 941.743 kb on + strand, within RR42_RS24975at 941.743 kb on + strand, within RR42_RS24975at 941.743 kb on + strand, within RR42_RS24975at 941.743 kb on + strand, within RR42_RS24975at 941.743 kb on + strand, within RR42_RS24975at 941.743 kb on + strand, within RR42_RS24975at 941.744 kb on - strand, within RR42_RS24975at 942.133 kb on + strand, within RR42_RS24975at 942.133 kb on + strand, within RR42_RS24975at 942.133 kb on + strand, within RR42_RS24975at 942.134 kb on - strand, within RR42_RS24975at 942.202 kb on + strand, within RR42_RS24975at 942.203 kb on - strand, within RR42_RS24975at 942.226 kb on + strand, within RR42_RS24975

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
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939,065 + RR42_RS24965 0.24 -0.5
939,065 + RR42_RS24965 0.24 -0.4
939,280 - RR42_RS24965 0.42 +0.8
939,280 - RR42_RS24965 0.42 -1.1
939,435 + RR42_RS24965 0.56 +0.2
939,506 + RR42_RS24965 0.62 +0.2
939,507 - RR42_RS24965 0.62 -0.7
939,959 - +0.3
940,730 + RR42_RS24970 0.57 -1.0
940,730 + RR42_RS24970 0.57 +0.1
940,730 + RR42_RS24970 0.57 +1.0
940,731 - RR42_RS24970 0.57 +0.9
940,731 - RR42_RS24970 0.57 -1.0
940,735 + RR42_RS24970 0.57 +0.8
940,735 + RR42_RS24970 0.57 +1.5
940,736 - RR42_RS24970 0.57 -1.0
940,835 - RR42_RS24970 0.65 +0.6
940,882 + RR42_RS24970 0.69 +3.2
940,882 + RR42_RS24970 0.69 -0.2
941,058 + RR42_RS24970 0.84 -0.2
941,059 - RR42_RS24970 0.84 +1.1
941,281 + +1.9
941,282 - -0.6
941,632 + RR42_RS24975 0.25 +2.0
941,633 - RR42_RS24975 0.25 -0.4
941,633 - RR42_RS24975 0.25 -0.3
941,742 - RR42_RS24975 0.33 +0.0
941,743 + RR42_RS24975 0.34 -0.7
941,743 + RR42_RS24975 0.34 -0.5
941,743 + RR42_RS24975 0.34 +0.4
941,743 + RR42_RS24975 0.34 +0.5
941,743 + RR42_RS24975 0.34 -1.4
941,743 + RR42_RS24975 0.34 -0.8
941,744 - RR42_RS24975 0.34 -0.3
942,133 + RR42_RS24975 0.63 -0.1
942,133 + RR42_RS24975 0.63 -1.7
942,133 + RR42_RS24975 0.63 -1.4
942,134 - RR42_RS24975 0.63 +0.6
942,202 + RR42_RS24975 0.68 -1.2
942,203 - RR42_RS24975 0.68 +0.1
942,226 + RR42_RS24975 0.70 +0.1

Or see this region's nucleotide sequence