Experiment: Ethanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24945 and RR42_RS24950 are separated by 142 nucleotides RR42_RS24950 and RR42_RS24955 are separated by 245 nucleotides RR42_RS24955 and RR42_RS24960 are separated by 25 nucleotides
RR42_RS24945: RR42_RS24945 - hypothetical protein, at 934,214 to 935,179
_RS24945
RR42_RS24950: RR42_RS24950 - TetR family transcriptional regulator, at 935,322 to 935,921
_RS24950
RR42_RS24955: RR42_RS24955 - LysR family transcriptional regulator, at 936,167 to 937,069
_RS24955
RR42_RS24960: RR42_RS24960 - long-chain fatty acid--CoA ligase, at 937,095 to 938,627
_RS24960
Position (kb) 936
937
938 Strain fitness (log2 ratio) -2
-1
0
1
2 at 935.341 kb on - strand at 935.341 kb on - strand at 935.597 kb on - strand, within RR42_RS24950 at 935.771 kb on - strand, within RR42_RS24950 at 935.773 kb on + strand, within RR42_RS24950 at 935.774 kb on - strand, within RR42_RS24950 at 935.774 kb on - strand, within RR42_RS24950 at 935.774 kb on - strand, within RR42_RS24950 at 935.834 kb on - strand, within RR42_RS24950 at 935.927 kb on - strand at 935.927 kb on - strand at 935.966 kb on + strand at 935.966 kb on + strand at 935.966 kb on + strand at 935.966 kb on + strand at 935.982 kb on + strand at 936.137 kb on + strand at 936.138 kb on - strand at 936.425 kb on + strand, within RR42_RS24955 at 936.426 kb on - strand, within RR42_RS24955 at 936.426 kb on - strand, within RR42_RS24955 at 936.510 kb on - strand, within RR42_RS24955 at 936.510 kb on - strand, within RR42_RS24955 at 936.510 kb on - strand, within RR42_RS24955 at 936.510 kb on - strand, within RR42_RS24955 at 936.670 kb on - strand, within RR42_RS24955 at 936.670 kb on - strand, within RR42_RS24955 at 936.738 kb on - strand, within RR42_RS24955 at 937.198 kb on + strand at 937.199 kb on - strand at 937.223 kb on - strand at 937.519 kb on + strand, within RR42_RS24960 at 937.519 kb on + strand, within RR42_RS24960 at 937.519 kb on + strand, within RR42_RS24960 at 937.519 kb on + strand, within RR42_RS24960 at 937.519 kb on + strand, within RR42_RS24960 at 937.554 kb on + strand, within RR42_RS24960 at 937.555 kb on - strand, within RR42_RS24960 at 937.690 kb on + strand, within RR42_RS24960 at 937.783 kb on + strand, within RR42_RS24960 at 937.784 kb on - strand, within RR42_RS24960 at 937.784 kb on - strand, within RR42_RS24960 at 937.875 kb on + strand, within RR42_RS24960 at 937.876 kb on - strand, within RR42_RS24960 at 937.876 kb on - strand, within RR42_RS24960 at 937.962 kb on + strand, within RR42_RS24960 at 937.963 kb on - strand, within RR42_RS24960
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol (C) remove 935,341 - +1.2 935,341 - +0.5 935,597 - RR42_RS24950 0.46 -0.1 935,771 - RR42_RS24950 0.75 -0.3 935,773 + RR42_RS24950 0.75 -0.1 935,774 - RR42_RS24950 0.75 -0.3 935,774 - RR42_RS24950 0.75 -0.4 935,774 - RR42_RS24950 0.75 +0.1 935,834 - RR42_RS24950 0.85 -0.3 935,927 - -0.3 935,927 - -0.1 935,966 + -0.0 935,966 + -2.3 935,966 + -0.5 935,966 + -0.7 935,982 + -0.5 936,137 + +0.4 936,138 - -0.7 936,425 + RR42_RS24955 0.29 +0.6 936,426 - RR42_RS24955 0.29 -0.7 936,426 - RR42_RS24955 0.29 +0.6 936,510 - RR42_RS24955 0.38 -0.3 936,510 - RR42_RS24955 0.38 +0.6 936,510 - RR42_RS24955 0.38 +0.2 936,510 - RR42_RS24955 0.38 +0.4 936,670 - RR42_RS24955 0.56 +0.9 936,670 - RR42_RS24955 0.56 +0.9 936,738 - RR42_RS24955 0.63 +2.1 937,198 + -0.6 937,199 - +0.9 937,223 - -0.3 937,519 + RR42_RS24960 0.28 +0.0 937,519 + RR42_RS24960 0.28 -0.2 937,519 + RR42_RS24960 0.28 +0.7 937,519 + RR42_RS24960 0.28 +1.1 937,519 + RR42_RS24960 0.28 -0.6 937,554 + RR42_RS24960 0.30 -0.9 937,555 - RR42_RS24960 0.30 +0.2 937,690 + RR42_RS24960 0.39 +0.7 937,783 + RR42_RS24960 0.45 -0.1 937,784 - RR42_RS24960 0.45 -0.1 937,784 - RR42_RS24960 0.45 -0.8 937,875 + RR42_RS24960 0.51 +0.1 937,876 - RR42_RS24960 0.51 -2.4 937,876 - RR42_RS24960 0.51 +0.4 937,962 + RR42_RS24960 0.57 +0.1 937,963 - RR42_RS24960 0.57 +0.8
Or see this region's nucleotide sequence