Experiment: Ethanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24780 and RR42_RS24785 are separated by 74 nucleotides RR42_RS24785 and RR42_RS24790 are separated by 689 nucleotides
RR42_RS24780: RR42_RS24780 - alpha/beta hydrolase, at 897,816 to 898,736
_RS24780
RR42_RS24785: RR42_RS24785 - NAD-dependent dehydratase, at 898,811 to 899,458
_RS24785
RR42_RS24790: RR42_RS24790 - LysR family transcriptional regulator, at 900,148 to 901,089
_RS24790
Position (kb) 898
899
900 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 897.843 kb on + strand at 897.843 kb on + strand at 897.844 kb on - strand at 897.844 kb on - strand at 897.868 kb on - strand at 898.098 kb on + strand, within RR42_RS24780 at 898.099 kb on - strand, within RR42_RS24780 at 898.116 kb on + strand, within RR42_RS24780 at 898.218 kb on - strand, within RR42_RS24780 at 898.218 kb on - strand, within RR42_RS24780 at 898.233 kb on + strand, within RR42_RS24780 at 898.233 kb on + strand, within RR42_RS24780 at 898.234 kb on - strand, within RR42_RS24780 at 898.402 kb on + strand, within RR42_RS24780 at 898.403 kb on - strand, within RR42_RS24780 at 898.660 kb on - strand at 898.660 kb on - strand at 898.719 kb on + strand at 898.719 kb on + strand at 898.720 kb on - strand at 898.720 kb on - strand at 898.720 kb on - strand at 898.720 kb on - strand at 898.735 kb on - strand at 898.833 kb on + strand at 898.833 kb on + strand at 898.834 kb on - strand at 898.834 kb on - strand at 898.875 kb on + strand at 898.875 kb on + strand at 899.011 kb on + strand, within RR42_RS24785 at 899.012 kb on - strand, within RR42_RS24785 at 899.033 kb on + strand, within RR42_RS24785 at 899.193 kb on - strand, within RR42_RS24785 at 899.193 kb on - strand, within RR42_RS24785 at 899.246 kb on + strand, within RR42_RS24785 at 899.246 kb on + strand, within RR42_RS24785 at 899.295 kb on - strand, within RR42_RS24785 at 899.429 kb on - strand at 899.472 kb on + strand at 899.472 kb on + strand at 899.472 kb on + strand at 899.473 kb on - strand at 899.536 kb on + strand at 899.536 kb on + strand at 899.536 kb on + strand at 899.536 kb on + strand at 899.537 kb on - strand at 899.559 kb on + strand at 899.559 kb on + strand at 899.559 kb on + strand at 899.560 kb on - strand at 899.560 kb on - strand at 899.560 kb on - strand at 899.560 kb on - strand at 899.560 kb on - strand at 899.560 kb on - strand at 899.655 kb on + strand at 899.655 kb on + strand at 899.656 kb on - strand at 899.656 kb on - strand at 899.973 kb on - strand at 900.100 kb on + strand at 900.207 kb on - strand at 900.207 kb on - strand at 900.429 kb on - strand, within RR42_RS24790
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol (C) remove 897,843 + +0.1 897,843 + -0.2 897,844 - +0.7 897,844 - -0.0 897,868 - +0.2 898,098 + RR42_RS24780 0.31 -1.0 898,099 - RR42_RS24780 0.31 -0.2 898,116 + RR42_RS24780 0.33 +0.2 898,218 - RR42_RS24780 0.44 +0.1 898,218 - RR42_RS24780 0.44 -0.2 898,233 + RR42_RS24780 0.45 +0.6 898,233 + RR42_RS24780 0.45 +0.7 898,234 - RR42_RS24780 0.45 -0.2 898,402 + RR42_RS24780 0.64 -0.3 898,403 - RR42_RS24780 0.64 -0.6 898,660 - +0.0 898,660 - +0.3 898,719 + -1.1 898,719 + -0.4 898,720 - -1.1 898,720 - +0.9 898,720 - -1.5 898,720 - +0.1 898,735 - +0.2 898,833 + +0.2 898,833 + +0.2 898,834 - +1.9 898,834 - +0.2 898,875 + -0.1 898,875 + +1.6 899,011 + RR42_RS24785 0.31 +0.3 899,012 - RR42_RS24785 0.31 +0.6 899,033 + RR42_RS24785 0.34 -0.3 899,193 - RR42_RS24785 0.59 +0.2 899,193 - RR42_RS24785 0.59 -0.1 899,246 + RR42_RS24785 0.67 +1.8 899,246 + RR42_RS24785 0.67 +1.0 899,295 - RR42_RS24785 0.75 +0.7 899,429 - -0.3 899,472 + -0.1 899,472 + -0.6 899,472 + +0.5 899,473 - +0.9 899,536 + +0.2 899,536 + +0.1 899,536 + -0.9 899,536 + +0.7 899,537 - +0.3 899,559 + +0.0 899,559 + -3.2 899,559 + -0.6 899,560 - -0.3 899,560 - +0.6 899,560 - +0.1 899,560 - +0.3 899,560 - -0.9 899,560 - +0.0 899,655 + -0.9 899,655 + +0.4 899,656 - -0.4 899,656 - -1.1 899,973 - -0.5 900,100 + +1.2 900,207 - -0.0 900,207 - +0.5 900,429 - RR42_RS24790 0.30 -0.3
Or see this region's nucleotide sequence